dfguan / purge_dups
haplotypic duplication identification tool
☆209Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for purge_dups
- Nanopore data assembler☆135Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆200Updated last year
- Yet another Hi-C scaffolding tool☆130Updated this week
- Find, circularise and annotate mitogenome from PacBio assemblies☆169Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆177Updated last month
- Fast and accurately polish the genome generated by long reads.☆213Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆175Updated 2 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆192Updated 2 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆146Updated 11 months ago
- De-Novo Repeat Discovery Tool☆194Updated last month
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated 3 weeks ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆171Updated 3 years ago
- ☆150Updated last month
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆88Updated 3 weeks ago
- Filtering and trimming of long read sequencing data☆189Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆100Updated 2 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 5 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆191Updated 9 months ago
- VGP repository for the genome assembly working group☆188Updated last year
- Comparison of multiple long read datasets☆103Updated this week
- k-mer based assembly evaluation☆283Updated 4 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆136Updated this week
- PASA software☆174Updated 10 months ago
- Long read aligner☆112Updated last year
- Constructing a pangenome gene graph☆174Updated 3 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆210Updated 2 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- Any Way to Show Multi genomic Synteny☆159Updated 2 weeks ago
- ☆119Updated last month
- Ultra-fast de novo assembler using long noisy reads☆129Updated 3 years ago