haplotypic duplication identification tool
☆291Oct 30, 2025Updated 8 months ago
Alternatives and similar repositories for purge_dups
Users that are interested in purge_dups are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- k-mer based assembly evaluation☆351Jul 6, 2026Updated 2 weeks ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆160Jun 26, 2026Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆404Apr 22, 2026Updated 3 months ago
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for fast and flexible genome assembly scaffolding and improvement☆571Feb 14, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆480Jul 1, 2026Updated 3 weeks ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆297May 28, 2026Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆178Updated this week
- Fast and accurate de novo assembler for long reads☆405May 10, 2024Updated 2 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆180Jun 23, 2026Updated last month
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆218Jun 30, 2026Updated 3 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆791May 31, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- software tools for haplotype assembly from sequence data☆232Feb 9, 2025Updated last year
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- Reference-free profiling of polyploid genomes☆144Oct 2, 2025Updated 9 months ago
- Fast genome analysis from unassembled short reads☆324Apr 8, 2024Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Identify and find telomeres, or telomeric repeats in a genome.☆171Nov 24, 2025Updated 8 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 4 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆184Jun 9, 2026Updated last month
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆112Jul 23, 2024Updated 2 years ago
- Evaluating genome assemblies☆123Mar 3, 2026Updated 4 months ago
- 3D de novo assembly (3D DNA) pipeline☆228Nov 29, 2023Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- Extensive de-novo TE Annotator☆464Jul 16, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆78Jun 12, 2020Updated 6 years ago
- assembly evaluation tool☆35May 11, 2022Updated 4 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆241Dec 29, 2023Updated 2 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆390Feb 13, 2025Updated last year
- A genome completeness evaluation tool based on miniprot☆254Updated this week
- An accurate GFF3/GTF lift over pipeline☆547Aug 1, 2023Updated 2 years ago