dfguan / purge_dupsLinks
haplotypic duplication identification tool
☆268Updated 3 weeks ago
Alternatives and similar repositories for purge_dups
Users that are interested in purge_dups are comparing it to the libraries listed below
Sorting:
- A gap-closing software tool that uses long reads to enhance genome assembly.☆221Updated last year
- Fast and accurately polish the genome generated by long reads.☆236Updated 10 months ago
- A genome completeness evaluation tool based on miniprot☆228Updated 2 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 4 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆230Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- De-Novo Repeat Discovery Tool☆223Updated 4 months ago
- k-mer based assembly evaluation☆332Updated last year
- Nanopore data assembler☆161Updated 3 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆161Updated 7 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- ☆218Updated 3 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 6 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆157Updated 3 weeks ago
- Any Way to Show Multi genomic Synteny☆210Updated 4 months ago
- PASA software☆194Updated 9 months ago
- Long read / genome alignment software☆305Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆193Updated last year
- Fast genome analysis from unassembled short reads☆299Updated last year
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆232Updated this week
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆281Updated this week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆282Updated 2 weeks ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆179Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆239Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆186Updated 2 months ago