haplotypic duplication identification tool
☆277Oct 30, 2025Updated 4 months ago
Alternatives and similar repositories for purge_dups
Users that are interested in purge_dups are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- k-mer based assembly evaluation☆340Jun 28, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆148Jul 7, 2025Updated 8 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆384Mar 11, 2026Updated 2 weeks ago
- Yet another k-mer analyzer☆165Dec 30, 2025Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A genomic k-mer counter (and sequence utility) with nice features.☆165Jul 4, 2025Updated 8 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆292Feb 25, 2026Updated last month
- Synteny and Rearrangement Identifier☆454Mar 17, 2026Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆166Oct 29, 2025Updated 4 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated 2 weeks ago
- Fast and accurate de novo assembler for long reads☆400May 10, 2024Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆757Mar 18, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- software tools for haplotype assembly from sequence data☆229Feb 9, 2025Updated last year
- Yet another Hi-C scaffolding tool☆175Nov 4, 2024Updated last year
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆192May 11, 2025Updated 10 months ago
- Fast genome analysis from unassembled short reads☆317Apr 8, 2024Updated last year
- Reference-free profiling of polyploid genomes☆142Oct 2, 2025Updated 5 months ago
- Fast and accurately polish the genome generated by long reads.☆241Jan 9, 2025Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Evaluating genome assemblies☆119Mar 3, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆107Jul 23, 2024Updated last year
- 3D de novo assembly (3D DNA) pipeline☆223Nov 29, 2023Updated 2 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆176Apr 14, 2025Updated 11 months ago
- A program for assessing the T2T genome continuity☆92Feb 28, 2026Updated 3 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆451Oct 20, 2025Updated 5 months ago
- Extensive de-novo TE Annotator☆435Mar 12, 2026Updated 2 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆212Jan 17, 2024Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- ☆78Jun 12, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆373Feb 13, 2025Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆209Nov 18, 2022Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Dec 2, 2022Updated 3 years ago
- PECAT, a phased error correct and assembly tool☆61Dec 8, 2025Updated 3 months ago