dfguan / purge_dupsLinks
haplotypic duplication identification tool
☆249Updated last year
Alternatives and similar repositories for purge_dups
Users that are interested in purge_dups are comparing it to the libraries listed below
Sorting:
- A gap-closing software tool that uses long reads to enhance genome assembly.☆215Updated 11 months ago
- Fast and accurately polish the genome generated by long reads.☆229Updated 7 months ago
- A genome completeness evaluation tool based on miniprot☆216Updated 3 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Nanopore data assembler☆158Updated 3 years ago
- k-mer based assembly evaluation☆321Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆225Updated last year
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆155Updated 3 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 3 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆141Updated 2 weeks ago
- Long read based human genomic structural variation detection with cuteSV☆269Updated 2 months ago
- ☆205Updated last week
- Generate an interactive dot plot from mummer or minimap alignments☆208Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆208Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated 9 months ago
- Any Way to Show Multi genomic Synteny☆201Updated last month
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 9 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆175Updated 3 months ago
- De-Novo Repeat Discovery Tool☆216Updated 3 weeks ago
- VGP repository for the genome assembly working group☆193Updated 2 months ago
- Fast genome analysis from unassembled short reads☆295Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆194Updated 2 months ago
- PASA software☆192Updated 5 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆223Updated last month
- Jasmine: SV Merging Across Samples☆219Updated 7 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆177Updated 2 weeks ago
- Comparison of multiple long read datasets☆141Updated last week
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆190Updated last year