dfguan / purge_dups
haplotypic duplication identification tool
☆218Updated last year
Alternatives and similar repositories for purge_dups:
Users that are interested in purge_dups are comparing it to the libraries listed below
- Nanopore data assembler☆140Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆190Updated 4 months ago
- A genome completeness evaluation tool based on miniprot☆188Updated 3 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆202Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆195Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆113Updated 2 weeks ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Fast and accurately polish the genome generated by long reads.☆215Updated last week
- Filtering and trimming of long read sequencing data☆197Updated 2 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆171Updated this week
- Yet another Hi-C scaffolding tool☆136Updated 2 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆155Updated last year
- VGP repository for the genome assembly working group☆188Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆137Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆175Updated 2 months ago
- k-mer based assembly evaluation☆297Updated 6 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆194Updated last year
- Comparison of multiple long read datasets☆121Updated last month
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 2 months ago
- De-Novo Repeat Discovery Tool☆199Updated last week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆139Updated this week
- PASA software☆179Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated 3 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆207Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆217Updated 5 months ago
- Long read based human genomic structural variation detection with cuteSV☆254Updated this week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆273Updated 3 months ago
- Constructing a pangenome gene graph☆178Updated 6 months ago
- ☆160Updated 4 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 8 months ago