dfguan / purge_dups
haplotypic duplication identification tool
☆238Updated last year
Alternatives and similar repositories for purge_dups:
Users that are interested in purge_dups are comparing it to the libraries listed below
- A gap-closing software tool that uses long reads to enhance genome assembly.☆205Updated 8 months ago
- A genome completeness evaluation tool based on miniprot☆209Updated last week
- Nanopore data assembler☆151Updated 3 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆181Updated 2 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Comparison of multiple long read datasets☆127Updated last month
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- Fast and accurately polish the genome generated by long reads.☆222Updated 3 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆180Updated last month
- VGP repository for the genome assembly working group☆193Updated last year
- Filtering and trimming of long read sequencing data☆203Updated 2 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆145Updated 3 weeks ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆130Updated last month
- Yet another Hi-C scaffolding tool☆146Updated 6 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆202Updated last month
- Jasmine: SV Merging Across Samples☆211Updated 4 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆149Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆200Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆176Updated 6 months ago
- De-Novo Repeat Discovery Tool☆209Updated this week
- k-mer based assembly evaluation☆309Updated 10 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆161Updated last year
- Long read / genome alignment software☆285Updated 6 months ago
- Any Way to Show Multi genomic Synteny☆185Updated last week
- Long read based human genomic structural variation detection with cuteSV☆260Updated 3 weeks ago
- PASA software☆188Updated 2 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆187Updated last year
- ☆185Updated last week
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆168Updated 6 months ago