isovic / raconLinks
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
☆288Updated last year
Alternatives and similar repositories for racon
Users that are interested in racon are comparing it to the libraries listed below
Sorting:
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- ☆259Updated 2 months ago
- quality filtering tool for long reads☆363Updated 2 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated 10 months ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆337Updated last month
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆298Updated 3 weeks ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆356Updated 2 weeks ago
- An overview of all nanopack tools☆267Updated 2 years ago
- Synteny and Rearrangement Identifier☆403Updated 4 months ago
- adapter trimmer for Oxford Nanopore reads☆369Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆319Updated 4 months ago
- k-mer based assembly evaluation☆323Updated last year
- Sequence correction provided by ONT Research☆474Updated last week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆275Updated 6 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Fast and accurately polish the genome generated by long reads.☆232Updated 7 months ago
- Long read / genome alignment software☆297Updated 9 months ago
- Fast and accurate de novo assembler for long reads☆392Updated last year
- A tool to circularize genome assemblies☆247Updated last year
- Classifier for metagenomic sequences☆264Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆331Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆233Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆225Updated last year
- the pangenome graph builder☆444Updated 3 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆269Updated last week
- Extensive de-novo TE Annotator☆400Updated 2 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year