isovic / raconLinks
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
☆287Updated last year
Alternatives and similar repositories for racon
Users that are interested in racon are comparing it to the libraries listed below
Sorting:
- Pilon is an automated genome assembly improvement and variant detection tool☆369Updated 3 years ago
- quality filtering tool for long reads☆366Updated 3 weeks ago
- An overview of all nanopack tools☆270Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆340Updated 2 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- ☆263Updated 3 months ago
- Classifier for metagenomic sequences☆266Updated 3 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆304Updated 2 weeks ago
- Fast and accurate de novo assembler for long reads☆394Updated last year
- Sequence correction provided by ONT Research☆482Updated last month
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- adapter trimmer for Oxford Nanopore reads☆373Updated last year
- k-mer based assembly evaluation☆327Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆364Updated last week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆277Updated 8 months ago
- Tool to plot synteny and structural rearrangements between genomes☆321Updated 6 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆226Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆241Updated 4 years ago
- Long read / genome alignment software☆300Updated 11 months ago
- Synteny and Rearrangement Identifier☆413Updated 5 months ago
- the pangenome graph builder☆455Updated 2 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆210Updated 3 months ago
- Toolset for SV simulation, comparison and filtering☆397Updated last year
- A tool to circularize genome assemblies☆247Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆333Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- Fast genome analysis from unassembled short reads☆297Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆277Updated last month