isovic / racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
☆278Updated 11 months ago
Alternatives and similar repositories for racon:
Users that are interested in racon are comparing it to the libraries listed below
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆276Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆361Updated 3 years ago
- quality filtering tool for long reads☆329Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆299Updated last year
- Fast and accurately polish the genome generated by long reads.☆222Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆320Updated 11 months ago
- An overview of all nanopack tools☆243Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆277Updated 6 months ago
- ☆254Updated 4 months ago
- Toolset for SV simulation, comparison and filtering☆378Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆220Updated last year
- ☆206Updated 3 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆268Updated 3 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆227Updated 4 years ago
- Tool to plot synteny and structural rearrangements between genomes☆303Updated 3 weeks ago
- Sequence correction provided by ONT Research☆451Updated 6 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆200Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆334Updated this week
- 3D de novo assembly (3D DNA) pipeline☆209Updated last year
- Synteny and Rearrangement Identifier☆378Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆251Updated last week
- Long read / genome alignment software☆285Updated 6 months ago
- A tool to circularize genome assemblies☆241Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆266Updated 2 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆212Updated 3 weeks ago
- Genome Assembly and Annotation Service code☆211Updated last year
- Filtering and trimming of long read sequencing data☆203Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆389Updated 11 months ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago