Alternatives and similar repositories for racon

Users that are interested in racon are comparing it to the libraries listed below

• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆371Updated 3 years ago
• alekseyzimin / masurca
  ☆267Updated 4 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆374Updated 2 months ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆314Updated last month
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated last year
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆425Updated 6 months ago
• lh3 / miniasm
  Ultrafast de novo assembly for long noisy reads (though having no consensus step)
  ☆343Updated 4 months ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆305Updated last year
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆272Updated 2 years ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆208Updated 2 years ago
• DaehwanKimLab / centrifuge
  Classifier for metagenomic sequences
  ☆267Updated 5 months ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆396Updated last year
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆375Updated last year
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆283Updated 9 months ago
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆486Updated 3 months ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆332Updated last year
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆367Updated last month
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆329Updated 7 months ago
• pangenome / pggb
  the pangenome graph builder
  ☆465Updated 3 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆234Updated 10 months ago
• rrwick / Basecalling-comparison
  A comparison of different Oxford Nanopore basecallers
  ☆315Updated 6 years ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆334Updated 2 months ago
• fritzsedlazeck / SURVIVOR
  Toolset for SV simulation, comparison and filtering
  ☆399Updated last year
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆299Updated last year
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆218Updated last year
• lbcb-sci / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆230Updated last year
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆240Updated 2 years ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆259Updated 2 years ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆282Updated 2 weeks ago