a short-read polishing tool for long-read assemblies
☆216Sep 19, 2025Updated 7 months ago
Alternatives and similar repositories for Polypolish
Users that are interested in Polypolish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆342Sep 11, 2025Updated 7 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆45Aug 20, 2025Updated 8 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆229Updated this week
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- quality filtering tool for long reads☆403Sep 17, 2025Updated 7 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆633Feb 18, 2026Updated 2 months ago
- hybrid assembly pipeline for bacterial genomes☆639Jul 25, 2024Updated last year
- Recombination-free trees☆63Sep 1, 2025Updated 7 months ago
- a long read simulator that can imitate many types of read problems☆282Apr 22, 2026Updated last week
- An updated pipeline for pangenome investigation☆356Apr 22, 2026Updated last week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 3 months ago
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated 2 weeks ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 2 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆150Jan 9, 2026Updated 3 months ago
- Minimal but speedy quality control for nanopore reads in Rust☆138Sep 16, 2024Updated last year
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Sequence correction provided by ONT Research☆507Apr 8, 2026Updated 3 weeks ago
- SKESA assembler☆126Oct 11, 2024Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- ☆248Apr 1, 2026Updated 3 weeks ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆228Sep 6, 2025Updated 7 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆213Mar 3, 2026Updated last month
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆359Mar 29, 2026Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 10 months ago
- Randomly subsample sequencing reads or alignments☆260Apr 14, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆121Feb 12, 2026Updated 2 months ago
- Genome size estimation from long read overlaps☆85Apr 13, 2026Updated 2 weeks ago
- ☆156Jun 18, 2024Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆669Dec 3, 2022Updated 3 years ago
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆921Apr 3, 2026Updated 3 weeks ago
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated 3 weeks ago