Alternatives and similar repositories for Polypolish

Users that are interested in Polypolish are comparing it to the libraries listed below

• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆192Updated this week
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆233Updated 4 months ago
• lskatz / mashtree
  Create a tree using Mash distances
  ☆181Updated 2 years ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆210Updated 2 weeks ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆146Updated 3 weeks ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆148Updated 3 weeks ago
• rpetit3 / dragonflye
  Assemble bacterial isolate genomes from Nanopore reads
  ☆127Updated last year
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆156Updated 10 months ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆164Updated 9 months ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆229Updated last year
• MaestSi / MetONTIIME
  A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
  ☆117Updated 3 weeks ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆99Updated last week
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆165Updated 3 years ago
• wdecoster / chopper
  ☆229Updated last month
• Gaius-Augustus / GALBA
  GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…
  ☆147Updated last year
• cmks / DAS_Tool
  DAS Tool
  ☆166Updated last year
• CDCgov / mycosnp-nf
  MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates
  ☆85Updated this week
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆158Updated 6 months ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆108Updated 4 years ago
• lbcb-sci / herro
  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …
  ☆238Updated 3 weeks ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆205Updated last year
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆233Updated 3 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆191Updated 8 months ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆119Updated last year
• artic-network / fieldbioinformatics
  The ARTIC fieldbioinformatics pipeline
  ☆128Updated 3 weeks ago
• rrwick / Perfect-bacterial-genome-tutorial
  ☆155Updated last year
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆199Updated 4 months ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆131Updated 3 years ago
• wwood / singlem
  Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
  ☆177Updated 2 weeks ago
• ncbi / SKESA
  SKESA assembler
  ☆124Updated last year