rrwick / PolypolishLinks
a short-read polishing tool for long-read assemblies
☆173Updated last year
Alternatives and similar repositories for Polypolish
Users that are interested in Polypolish are comparing it to the libraries listed below
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆160Updated last week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆135Updated 2 months ago
- Foreign Contamination Screening caller scripts and documentation☆133Updated 4 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆168Updated this week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 4 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆205Updated this week
- BSR-Based Allele Calling Algorithm☆149Updated last week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆153Updated 3 months ago
- Create a tree using Mash distances☆169Updated last year
- snipit: summarise snps relative to your reference sequence☆163Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆216Updated 3 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆128Updated 6 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- SKESA assembler☆121Updated 10 months ago
- ☆140Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆158Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆237Updated last month
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated last year
- Metagenomic classification of long-read sequencing data☆89Updated this week
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆111Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 3 months ago
- DAS Tool☆155Updated last year
- Nanopore data assembler☆158Updated 3 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆138Updated last week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆203Updated 11 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆79Updated 11 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- ☆205Updated last week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆192Updated 2 weeks ago