rrwick / PolypolishLinks
a short-read polishing tool for long-read assemblies
☆175Updated last week
Alternatives and similar repositories for Polypolish
Users that are interested in Polypolish are comparing it to the libraries listed below
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆167Updated last week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆170Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated last week
- Foreign Contamination Screening caller scripts and documentation☆135Updated 5 months ago
- Create a tree using Mash distances☆170Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 4 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆153Updated 4 months ago
- BSR-Based Allele Calling Algorithm☆149Updated last month
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆146Updated 4 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆128Updated 7 months ago
- ☆144Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆215Updated 2 weeks ago
- Get assembly statistics from FASTA and FASTQ files☆122Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆217Updated 3 months ago
- SKESA assembler☆122Updated 10 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆70Updated 4 years ago
- The ARTIC field bioinformatics pipeline☆125Updated this week
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆186Updated 3 months ago
- Interactive quality assessment of genome assemblies☆107Updated 3 months ago
- DDBJ Fast Annotation and Submission Tool☆82Updated 4 months ago
- DAS Tool☆156Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆140Updated 3 weeks ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆244Updated last month
- Reorients assembled microbial sequences☆125Updated last week
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- ☆129Updated last month