bcgsc / straglr
Tandem repeat expansion detection or genotyping from long-read alignments
☆101Updated 2 months ago
Alternatives and similar repositories for straglr:
Users that are interested in straglr are comparing it to the libraries listed below
- Phased assembly variant caller☆112Updated 4 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆133Updated last month
- Toolkit for calling structural variants using short or long reads☆102Updated last week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆113Updated last week
- Evaluation and polishing workflows for T2T genome assemblies☆122Updated 6 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated this week
- Pangenome-based genome inference☆128Updated this week
- Structural Variant Identification Method using Genome Assemblies☆108Updated 2 years ago
- ☆61Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆145Updated 2 weeks ago
- A tool for somatic structural variant calling using long reads☆126Updated last week
- Jasmine: SV Merging Across Samples☆210Updated 3 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆82Updated last month
- Application of pan-genome for population☆104Updated 6 months ago
- High-precision TE Annotator☆109Updated this week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆177Updated 3 weeks ago
- Evaluating genome assemblies☆87Updated last month
- ☆110Updated last month
- Constructing a pangenome gene graph☆186Updated 2 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆100Updated last month
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 weeks ago
- GenMap - Fast and Exact Computation of Genome Mappability☆105Updated 9 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆142Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Mapping pipeline for data generated using Arima-HiC☆76Updated 10 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆60Updated 3 weeks ago
- Comparison of multiple long read datasets☆125Updated 2 weeks ago
- Research release basecalling models and configurations☆110Updated 10 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆86Updated 8 months ago
- A genome completeness evaluation tool based on miniprot☆204Updated last month