bcgsc / straglrLinks
Tandem repeat expansion detection or genotyping from long-read alignments
☆134Updated 2 weeks ago
Alternatives and similar repositories for straglr
Users that are interested in straglr are comparing it to the libraries listed below
Sorting:
- Evaluation and polishing workflows for T2T genome assemblies☆141Updated 5 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆148Updated 5 months ago
- A tool for somatic structural variant calling using long reads☆155Updated last month
- Comparison of multiple long read datasets☆147Updated last week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆163Updated this week
- Yet another k-mer analyzer☆152Updated last week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆129Updated last month
- Create statistic summary of an Oxford Nanopore read dataset☆124Updated 3 years ago
- Structural Variant Identification Method using Genome Assemblies☆128Updated 3 years ago
- Evaluating genome assemblies☆109Updated 3 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆97Updated last year
- Research release basecalling models and configurations☆117Updated 6 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- Phased assembly variant caller☆129Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆159Updated 9 months ago
- Quality control tools for nanopore sequencing data☆110Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆214Updated this week
- accurate LiftOver tool for new genome assemblies☆139Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- High-precision TE Annotator☆140Updated last week
- Jasmine: SV Merging Across Samples☆232Updated 11 months ago
- Tools for plotting methylation data in various ways☆165Updated 2 weeks ago
- Collection of tools for the analysis of CpG data☆99Updated 5 months ago
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- ☆119Updated 3 weeks ago
- Variant calling tool for long-read sequencing data☆117Updated 8 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆164Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆228Updated 2 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆102Updated last week