A tool for generating consensus long-read assemblies for bacterial genomes
☆340Sep 11, 2025Updated 5 months ago
Alternatives and similar repositories for Trycycler
Users that are interested in Trycycler are comparing it to the libraries listed below
Sorting:
- hybrid assembly pipeline for bacterial genomes☆634Jul 25, 2024Updated last year
- a short-read polishing tool for long-read assemblies☆207Sep 19, 2025Updated 5 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated last week
- Reorients assembled microbial sequences☆133Aug 21, 2025Updated 6 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆128Jan 22, 2025Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆148Jan 9, 2026Updated last month
- quality filtering tool for long reads☆394Sep 17, 2025Updated 5 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆480Jan 31, 2026Updated last month
- ☆157Jun 18, 2024Updated last year
- An updated pipeline for pangenome investigation☆344Jan 15, 2026Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆85Jan 24, 2026Updated last month
- De novo genome assembler for long uncorrected reads☆229Nov 15, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆217Updated this week
- Rapid haploid variant calling and core genome alignment☆567Dec 12, 2025Updated 2 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆905May 2, 2025Updated 9 months ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- A flexible pipeline for complete analysis of bacterial genomes☆500Dec 19, 2025Updated 2 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Mar 15, 2021Updated 4 years ago
- Gene cluster comparison figure generator☆636Dec 22, 2025Updated 2 months ago
- Sequence correction provided by ONT Research☆500Dec 8, 2025Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆255Dec 13, 2025Updated 2 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆369Feb 9, 2026Updated 2 weeks ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆105Jan 22, 2026Updated last month
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆351Updated this week
- Antibiotic resistance prediction in minutes☆114Nov 24, 2024Updated last year
- Rapid prokaryotic genome annotation☆957Jan 6, 2026Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆403Jun 12, 2025Updated 8 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆294Feb 3, 2026Updated 3 weeks ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆213Aug 27, 2025Updated 6 months ago
- A tool for removing redundant genomes from a set of assemblies☆78Sep 10, 2025Updated 5 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆173Updated this week
- 🪡Correct and scaffold assemblies using long reads☆57Sep 4, 2025Updated 5 months ago
- Create a tree using Mash distances☆182Oct 24, 2023Updated 2 years ago
- Build a partitioned pangenome graph from microbial genomes☆294Updated this week
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆168Apr 16, 2025Updated 10 months ago
- SKESA assembler☆124Oct 11, 2024Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆236Dec 29, 2023Updated 2 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Dec 5, 2023Updated 2 years ago