A tool for generating consensus long-read assemblies for bacterial genomes
☆350Jul 24, 2026Updated 3 months ago
Alternatives and similar repositories for Trycycler
Users that are interested in Trycycler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆691Oct 11, 2026Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆244Oct 8, 2026Updated 3 weeks ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- quality filtering tool for long reads☆421Sep 17, 2025Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆158Jul 24, 2026Updated 3 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆516Jul 17, 2026Updated 3 months ago
- An updated pipeline for pangenome investigation☆378Updated this week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆92Updated this week
- De novo genome assembler for long uncorrected reads☆238Nov 15, 2023Updated 2 years ago
- ☆158Jul 24, 2026Updated 3 months ago
- Rapid haploid variant calling and core genome alignment☆595Dec 12, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆954Apr 3, 2026Updated 6 months ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆528May 20, 2026Updated 5 months ago
- A tool to circularize genome assemblies☆258Apr 6, 2024Updated 2 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆271Jun 11, 2026Updated 4 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆525Aug 5, 2026Updated 2 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆391Aug 31, 2026Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆189Apr 16, 2025Updated last year
- NCBI Prokaryotic Genome Annotation Pipeline☆391Aug 19, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid prokaryotic genome annotation☆998Jan 6, 2026Updated 9 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆412Mar 2, 2026Updated 7 months ago
- Recombination-free trees☆75Jul 24, 2026Updated 3 months ago
- Gene cluster comparison figure generator☆660Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated last month
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆226Oct 7, 2026Updated 3 weeks ago
- Create a tree using Mash distances☆196Oct 24, 2023Updated 3 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆678Jul 7, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for removing redundant genomes from a set of assemblies☆86Jul 24, 2026Updated 3 months ago
- Plotting scripts for long read sequencing data☆564Oct 1, 2026Updated 3 weeks ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- Pan-genome wide association studies☆228May 29, 2024Updated 2 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆626Oct 20, 2026Updated last week
- Read alignment statistics for metagenomics☆411Updated this week
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆112Oct 12, 2026Updated 2 weeks ago