Alternatives and similar repositories for Trycycler

Users that are interested in Trycycler are comparing it to the libraries listed below

• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆262Updated last month
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆387Updated 4 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆340Updated 10 months ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆279Updated 3 weeks ago
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆292Updated last month
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆365Updated 6 months ago
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆339Updated 3 weeks ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆252Updated last year
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆252Updated last month
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆378Updated 2 weeks ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆213Updated 3 years ago
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆280Updated last year
• nf-core / mag
  Assembly and binning of metagenomes
  ☆273Updated this week
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆375Updated 3 years ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆245Updated 4 years ago
• alekseyzimin / masurca
  ☆271Updated 7 months ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆401Updated 7 months ago
• wdecoster / chopper
  ☆231Updated this week
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆223Updated 2 weeks ago
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆326Updated 2 months ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆199Updated 4 months ago
• sanger-pathogens / snp-sites
  Finds SNP sites from a multi-FASTA alignment file
  ☆273Updated 5 years ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆147Updated this week
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated last year
• DaehwanKimLab / centrifuge
  Classifier for metagenomic sequences
  ☆270Updated 7 months ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆446Updated 9 months ago
• widdowquinn / pyani
  Application and Python module for average nucleotide identity analyses of microbes.
  ☆217Updated 7 months ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆247Updated 10 months ago
• jtlovell / GENESPACE
  ☆232Updated last year
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆283Updated 2 months ago