A tool for generating consensus long-read assemblies for bacterial genomes
☆348Jul 24, 2026Updated last month
Alternatives and similar repositories for Trycycler
Users that are interested in Trycycler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated last month
- hybrid assembly pipeline for bacterial genomes☆651Jul 29, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆670Aug 7, 2026Updated 3 weeks ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 2 months ago
- quality filtering tool for long reads☆413Sep 17, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆154Jul 24, 2026Updated last month
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆238Aug 14, 2026Updated 2 weeks ago
- ☆159Jul 24, 2026Updated last month
- Mass screening of contigs for antimicrobial and virulence genes☆507Jul 17, 2026Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Aug 24, 2026Updated last week
- An updated pipeline for pangenome investigation☆373Jul 2, 2026Updated last month
- De novo assembler for single molecule sequencing reads using repeat graphs☆950Apr 3, 2026Updated 4 months ago
- De novo genome assembler for long uncorrected reads☆233Nov 15, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated 3 weeks ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆523May 20, 2026Updated 3 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆389Aug 19, 2026Updated last week
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆388Aug 10, 2026Updated 2 weeks ago
- Rapid haploid variant calling and core genome alignment☆591Dec 12, 2025Updated 8 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- Gene cluster comparison figure generator☆652Dec 22, 2025Updated 8 months ago
- Rapid prokaryotic genome annotation☆993Jan 6, 2026Updated 7 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆264Jun 11, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated last year
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆110Jan 22, 2026Updated 7 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆182Aug 10, 2026Updated 2 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 5 months ago
- Antibiotic resistance prediction in minutes☆120Mar 27, 2026Updated 5 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆223Aug 27, 2025Updated last year
- A tool for removing redundant genomes from a set of assemblies☆85Jul 24, 2026Updated last month
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆675Jul 7, 2026Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆182Apr 16, 2025Updated last year
- SKESA assembler☆127Oct 11, 2024Updated last year
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Aug 5, 2026Updated 3 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆242Dec 29, 2023Updated 2 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆79Dec 5, 2023Updated 2 years ago