A tool for generating consensus long-read assemblies for bacterial genomes
☆342Sep 11, 2025Updated 7 months ago
Alternatives and similar repositories for Trycycler
Users that are interested in Trycycler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a short-read polishing tool for long-read assemblies☆216Sep 19, 2025Updated 7 months ago
- hybrid assembly pipeline for bacterial genomes☆639Jul 25, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆633Feb 18, 2026Updated 2 months ago
- quality filtering tool for long reads☆403Sep 17, 2025Updated 7 months ago
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆150Jan 9, 2026Updated 3 months ago
- ☆156Jun 18, 2024Updated last year
- Mass screening of contigs for antimicrobial and virulence genes☆491Apr 3, 2026Updated 3 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆229Updated this week
- An updated pipeline for pangenome investigation☆356Apr 22, 2026Updated last week
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆921Apr 3, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Sequence correction provided by ONT Research☆507Apr 8, 2026Updated 3 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆504Updated this week
- NCBI Prokaryotic Genome Annotation Pipeline☆376Updated this week
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆359Mar 29, 2026Updated last month
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Mar 15, 2021Updated 5 years ago
- Rapid haploid variant calling and core genome alignment☆582Dec 12, 2025Updated 4 months ago
- Gene cluster comparison figure generator☆640Dec 22, 2025Updated 4 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆259Dec 13, 2025Updated 4 months ago
- Rapid prokaryotic genome annotation☆976Jan 6, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool to circularize genome assemblies☆255Apr 6, 2024Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆45Aug 20, 2025Updated 8 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 3 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated last month
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆176Apr 22, 2026Updated last week
- Antibiotic resistance prediction in minutes☆115Mar 27, 2026Updated last month
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆216Aug 27, 2025Updated 8 months ago
- A tool for removing redundant genomes from a set of assemblies☆80Sep 10, 2025Updated 7 months ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆669Dec 3, 2022Updated 3 years ago
- SKESA assembler☆126Oct 11, 2024Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆174Apr 16, 2025Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆77Dec 5, 2023Updated 2 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Apr 1, 2026Updated 3 weeks ago