Create a tree using Mash distances
☆188Oct 24, 2023Updated 2 years ago
Alternatives and similar repositories for mashtree
Users that are interested in mashtree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 8 months ago
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 7 months ago
- An updated pipeline for pangenome investigation☆356Apr 22, 2026Updated last week
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a short-read polishing tool for long-read assemblies☆216Sep 19, 2025Updated 7 months ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 2 weeks ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆154Dec 31, 2025Updated 4 months ago
- Fast genome and metagenome distance estimation using MinHash☆440Sep 19, 2025Updated 7 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆259Dec 13, 2025Updated 4 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆633Feb 18, 2026Updated 2 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3