lbcb-sci / ravenLinks
De novo genome assembler for long uncorrected reads
☆226Updated last year
Alternatives and similar repositories for raven
Users that are interested in raven are comparing it to the libraries listed below
Sorting:
- Fast and accurately polish the genome generated by long reads.☆235Updated 9 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆226Updated last year
- ☆212Updated 2 weeks ago
- k-mer based assembly evaluation☆327Updated last year
- A tool to circularize genome assemblies☆247Updated last year
- Randomly subsample sequencing reads or alignments☆240Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆171Updated last year
- ☆263Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆321Updated 6 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆231Updated 3 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 8 months ago
- Nanopore data assembler☆161Updated 3 years ago
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- VGP repository for the genome assembly working group☆193Updated 4 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆304Updated 2 weeks ago
- haplotypic duplication identification tool☆259Updated last year
- A genome completeness evaluation tool based on miniprot☆222Updated 3 weeks ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆237Updated last year
- Long read / genome alignment software☆300Updated 11 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- A bioinformatics tool for working with modified bases☆214Updated 3 weeks ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆277Updated last month
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆194Updated 3 weeks ago
- Bacterial ribosomal RNA predictor☆256Updated 2 years ago
- PEPPER-Margin-DeepVariant☆252Updated last year
- CAMISIM: Simulating metagenomes and microbial communities☆214Updated last week
- base-accurate DNA sequence alignments using WFA and mashmap3☆203Updated 2 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago