De novo genome assembler for long uncorrected reads
☆231Nov 15, 2023Updated 2 years ago
Alternatives and similar repositories for raven
Users that are interested in raven are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆930Apr 3, 2026Updated last month
- Sequence correction provided by ONT Research☆513Apr 8, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 8 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 8 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Genome size estimation from long read overlaps☆89May 1, 2026Updated 2 weeks ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- hybrid assembly pipeline for bacterial genomes☆641Jul 25, 2024Updated last year
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- quality filtering tool for long reads☆404Sep 17, 2025Updated 8 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆563Feb 14, 2024Updated 2 years ago
- ☆275Jun 26, 2025Updated 10 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- 🔗Genome assembly scaffolder using minimizer graphs☆85Apr 1, 2026Updated last month
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 5 months ago
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆251Apr 13, 2026Updated last month
- An updated pipeline for pangenome investigation☆358May 13, 2026Updated last week
- Long read / genome alignment software☆317Dec 16, 2025Updated 5 months ago
- Synteny and Rearrangement Identifier☆467Mar 17, 2026Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A tool for Racon polishing of miniasm assemblies☆81Mar 2, 2026Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 3 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jan 9, 2026Updated 4 months ago
- Randomly subsample sequencing reads or alignments☆265May 11, 2026Updated last week
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- Plotting scripts for long read sequencing data☆550Mar 17, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆669Dec 3, 2022Updated 3 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆216Mar 20, 2026Updated 2 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆239Sep 6, 2024Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Nanopore data assembler☆168Mar 27, 2022Updated 4 years ago