lbcb-sci / raven
De novo genome assembler for long uncorrected reads
☆212Updated last year
Alternatives and similar repositories for raven:
Users that are interested in raven are comparing it to the libraries listed below
- Fast and accurately polish the genome generated by long reads.☆215Updated last week
- A tool to circularize genome assemblies☆233Updated 9 months ago
- a long read simulator that can imitate many types of read problems☆193Updated 5 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆155Updated last year
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆201Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆313Updated 7 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆207Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆273Updated 3 months ago
- Filtering and trimming of long read sequencing data☆197Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆374Updated 3 weeks ago
- quality filtering tool for long reads☆308Updated last year
- Long read / genome alignment software☆268Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆188Updated 3 months ago
- ☆248Updated 3 weeks ago
- Pan-genome wide association studies☆173Updated 7 months ago
- A minimap2 frontend for PacBio native data formats☆178Updated last month
- Randomly subsample sequencing reads or alignments☆219Updated last month
- An updated pipeline for pangenome investigation☆274Updated 3 months ago
- A bioinformatics tool for working with modified bases☆163Updated last week
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆180Updated 6 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆195Updated 4 months ago
- Pairwise whole genome aligner☆143Updated this week
- Comparison of multiple long read datasets☆121Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆292Updated last month
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆181Updated 3 weeks ago
- Scan contig files against PubMLST typing schemes☆206Updated 2 years ago
- Nanopore data assembler☆140Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆202Updated 2 years ago
- k-mer based assembly evaluation☆297Updated 6 months ago
- Synteny and Rearrangement Identifier☆355Updated last month