OpenGene / fastplongLinks
Ultra-fast preprocessing and quality control for long-read sequencing data
☆213Updated 4 months ago
Alternatives and similar repositories for fastplong
Users that are interested in fastplong are comparing it to the libraries listed below
Sorting:
- ☆227Updated last month
- ☆230Updated 11 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 8 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆207Updated this week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆190Updated last month
- Any Way to Show Multi genomic Synteny☆216Updated 6 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆179Updated last month
- Foreign Contamination Screening caller scripts and documentation☆155Updated 10 months ago
- Nanopore data assembler☆163Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated 2 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆199Updated 4 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Version 5 of the CAFE phylogenetics software☆158Updated 11 months ago
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- Constructing a pangenome gene graph☆203Updated 5 months ago
- A genome completeness evaluation tool based on miniprot☆232Updated 4 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆156Updated 6 months ago
- Fast and accurately polish the genome generated by long reads.☆239Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆168Updated 9 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆190Updated last week
- A bioinformatics tool for working with modified bases☆240Updated last month
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- ☆153Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆202Updated last month
- accurate LiftOver tool for new genome assemblies☆146Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 4 months ago
- ☆177Updated 3 months ago
- Pangenome-based genome inference☆153Updated last month