OpenGene / fastplong
Ultra-fast preprocessing and quality control for long-read sequencing data
☆133Updated last month
Alternatives and similar repositories for fastplong
Users that are interested in fastplong are comparing it to the libraries listed below
Sorting:
- ☆189Updated 3 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- ☆207Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆133Updated last month
- Any Way to Show Multi genomic Synteny☆187Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆223Updated 4 months ago
- A bioinformatics tool for working with modified bases☆186Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆201Updated last year
- An ultra-fast and efficient genomic tool for coverage calculation☆148Updated last month
- Earl Grey: A fully automated TE curation and annotation pipeline☆168Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆303Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆127Updated last week
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆162Updated last year
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last year
- ☆124Updated this week
- ☆91Updated last week
- Metagenomic classification of long-read sequencing data☆83Updated last week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆119Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆182Updated 2 weeks ago
- accurate LiftOver tool for new genome assemblies☆126Updated 9 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆181Updated this week
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- a tool for inferring species tree from sequencing reads☆149Updated 2 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated last month
- Nanopore demultiplexing, QC and alignment pipeline☆201Updated 2 weeks ago
- A genome completeness evaluation tool based on miniprot☆211Updated last week
- OPERA-MS - Hybrid Metagenomic Assembler☆94Updated 10 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆123Updated 6 months ago
- Metatranscriptomics Tutorial☆62Updated last year