Ultra-fast preprocessing and quality control for long-read sequencing data
☆243Sep 11, 2026Updated last month
Alternatives and similar repositories for fastplong
Users that are interested in fastplong are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆240Oct 2, 2026Updated last week
- A new high-resolution long-read metagenome assembler for even noisy reads☆173Oct 1, 2026Updated last week
- ☆262Oct 1, 2026Updated last week
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated last month
- quality filtering tool for long reads☆419Sep 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 2 months ago
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 3 months ago
- Extremely fast and accurate Nanopore demultiplexing☆106Sep 5, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Oct 4, 2026Updated last week
- Fast DNA search and [host] depletion using minimizers☆127Oct 2, 2026Updated last week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆234May 9, 2026Updated 5 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Randomly subsample sequencing reads or alignments☆278Updated this week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆54Jun 10, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pairwise whole genome aligner☆244Sep 4, 2026Updated last month
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated last month
- Ultra-rapid detection of viral variants directly from sequencing data☆48Sep 16, 2026Updated 3 weeks ago
- Amplicon sequencing variants from modern nanopore / HiFi long read amplicons☆65Updated this week
- A genome completeness evaluation tool based on miniprot☆269Updated this week
- Graph-based assembly phasing☆102Nov 25, 2025Updated 10 months ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆336Mar 29, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Rapid & standardized genome annotation using protein structural information☆81Sep 16, 2026Updated 3 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆393Updated this week
- Genome browser 🧬👀🚀☆35Aug 24, 2026Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆156Jul 24, 2026Updated 2 months ago
- Successor of bwa-mem for short-read alignment☆352Oct 1, 2026Updated last week
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆226Updated this week
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆264Sep 16, 2026Updated 3 weeks ago
- Scoring GT/AG sites for improving spliced alignment☆59Nov 10, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Precise host read removal☆132Apr 13, 2026Updated 5 months ago
- An extensible and performant aligner and read mapper☆107Sep 15, 2026Updated 3 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆683Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆952Apr 3, 2026Updated 6 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,436Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆350Jul 24, 2026Updated 2 months ago
- Tearing through FASTA/Q sequences☆41Jul 9, 2026Updated 3 months ago