DRL / blobtools
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
☆197Updated 6 months ago
Alternatives and similar repositories for blobtools:
Users that are interested in blobtools are comparing it to the libraries listed below
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆183Updated last month
- Fast and accurately polish the genome generated by long reads.☆219Updated 2 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆159Updated last year
- A tool to circularize genome assemblies☆239Updated 11 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆176Updated 2 weeks ago
- ☆177Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆316Updated 9 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆121Updated 4 months ago
- Tool to plot synteny and structural rearrangements between genomes☆300Updated last month
- BSR-Based Allele Calling Algorithm☆140Updated last week
- Generate an interactive dot plot from mummer or minimap alignments☆197Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆113Updated 2 weeks ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆184Updated last year
- Pan-genome wide association studies☆190Updated 9 months ago
- Bacterial ribosomal RNA predictor☆238Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆159Updated this week
- Nanopore data assembler☆145Updated 2 years ago
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- An updated pipeline for pangenome investigation☆288Updated 2 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 10 months ago
- A genome completeness evaluation tool based on miniprot☆194Updated last week
- quality filtering tool for long reads☆323Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 4 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆259Updated 3 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 3 years ago
- ☆199Updated last month
- Any Way to Show Multi genomic Synteny☆176Updated 4 months ago