DRL / blobtools
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
☆201Updated 8 months ago
Alternatives and similar repositories for blobtools:
Users that are interested in blobtools are comparing it to the libraries listed below
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆188Updated 2 months ago
- ☆185Updated last week
- A tool to circularize genome assemblies☆241Updated last year
- Fast and accurately polish the genome generated by long reads.☆222Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆303Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- Filtering and trimming of long read sequencing data☆203Updated 2 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆114Updated 2 months ago
- Pan-genome wide association studies☆193Updated 11 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆137Updated this week
- Generate an interactive dot plot from mummer or minimap alignments☆200Updated last year
- An updated pipeline for pangenome investigation☆297Updated 2 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆187Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆135Updated last year
- Earl Grey: A fully automated TE curation and annotation pipeline☆168Updated last week
- Nanopore data assembler☆151Updated 3 years ago
- Bacterial ribosomal RNA predictor☆242Updated last year
- quality filtering tool for long reads☆329Updated last year
- Foreign Contamination Screening caller scripts and documentation☆129Updated last month
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆144Updated last week
- ☆206Updated 3 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆161Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆320Updated 11 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆181Updated 2 months ago
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆137Updated 3 years ago
- Metagenomic classification of long-read sequencing data☆82Updated 3 weeks ago
- BSR-Based Allele Calling Algorithm☆142Updated 2 weeks ago
- snipit: summarise snps relative to your reference sequence☆158Updated 3 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆277Updated 6 months ago