sanger-pathogens / circlatorLinks
A tool to circularize genome assemblies
☆247Updated last year
Alternatives and similar repositories for circlator
Users that are interested in circlator are comparing it to the libraries listed below
Sorting:
- Bacterial ribosomal RNA predictor☆256Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆333Updated 3 weeks ago
- Pan-genome wide association studies☆204Updated last year
- Fast and accurately polish the genome generated by long reads.☆235Updated 9 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- ☆263Updated 3 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆239Updated last year
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- Classifier for metagenomic sequences☆266Updated 3 months ago
- ☆212Updated last week
- Scan contig files against PubMLST typing schemes☆247Updated 2 years ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆190Updated last year
- Rapid comparison and dereplication of genomes☆311Updated 3 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆237Updated 2 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆221Updated this week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆194Updated 2 weeks ago
- quality filtering tool for long reads☆366Updated 3 weeks ago
- An updated pipeline for pangenome investigation☆316Updated 7 months ago
- Processing pipeline for pan-genome visulization and exploration☆140Updated 2 years ago
- k-mer based assembly evaluation☆327Updated last year
- Fast genome analysis from unassembled short reads☆297Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆321Updated 6 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆369Updated 3 years ago
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆227Updated last year
- Synteny and Rearrangement Identifier☆413Updated 5 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Build a partitioned pangenome graph from microbial genomes☆281Updated this week
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago