A tool to circularize genome assemblies
☆258Apr 6, 2024Updated 2 years ago
Alternatives and similar repositories for circlator
Users that are interested in circlator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- hybrid assembly pipeline for bacterial genomes☆653Jul 29, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆685Updated this week
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 3 months ago
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆350Jul 24, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 7 months ago
- An updated pipeline for pangenome investigation☆375Jul 2, 2026Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆390Apr 10, 2022Updated 4 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 8 months ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆953Apr 3, 2026Updated 6 months ago
- quality filtering tool for long reads☆419Sep 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆678Jul 7, 2026Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆622Updated this week
- Rapid haploid variant calling and core genome alignment☆595Dec 12, 2025Updated 10 months ago
- Mummer alignment tool☆576Feb 4, 2025Updated last year
- Graph-based assembly phasing☆102Nov 25, 2025Updated 10 months ago
- Rapid large-scale prokaryote pan genome analysis☆380Nov 3, 2025Updated 11 months ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆359Jul 19, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆158Sep 2, 2026Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Oct 1, 2026Updated last week
- Finds SNP sites from a multi-FASTA alignment file☆280Dec 16, 2020Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆86Jul 24, 2026Updated 2 months ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 2 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆391Aug 31, 2026Updated last month
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆250Jan 18, 2024Updated 2 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆514Jul 17, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid comparison and dereplication of genomes☆358Updated this week
- Gene cluster comparison figure generator☆655Updated this week
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆556Updated this week
- Fast Whole-Genome Similarity (ANI) Estimation☆481Sep 14, 2026Updated 3 weeks ago
- Quality control for MinION sequencing data☆220Mar 17, 2026Updated 6 months ago
- Variational autoencoder for metagenomic binning☆333Apr 27, 2026Updated 5 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆389Aug 19, 2026Updated last month