Alternatives and similar repositories for circlator

Users that are interested in circlator are comparing it to the libraries listed below

• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆279Updated last month
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆338Updated 5 months ago
• DaehwanKimLab / centrifuge
  Classifier for metagenomic sequences
  ☆270Updated 7 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆240Updated last year
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆340Updated 10 months ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆209Updated last year
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆214Updated 3 years ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆207Updated last year
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated last year
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆309Updated last year
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆223Updated 3 weeks ago
• alekseyzimin / masurca
  ☆271Updated 7 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆389Updated 4 months ago
• wdecoster / chopper
  ☆231Updated last week
• fbreitwieser / krakenuniq
  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
  ☆243Updated 2 years ago
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆287Updated 5 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆195Updated 2 years ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆263Updated last month
• roblanf / minion_qc
  Quality control for MinION sequencing data
  ☆217Updated 3 years ago
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆252Updated last month
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆376Updated 3 years ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆338Updated last year
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆326Updated 3 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆207Updated 3 years ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆245Updated 5 years ago
• bioinformatics-centre / kaiju
  Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
  ☆298Updated 9 months ago
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆341Updated 3 weeks ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆290Updated last month
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆199Updated last week
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆378Updated 3 weeks ago