sanger-pathogens / circlatorLinks
A tool to circularize genome assemblies
☆250Updated last year
Alternatives and similar repositories for circlator
Users that are interested in circlator are comparing it to the libraries listed below
Sorting:
- Fast and accurately polish the genome generated by long reads.☆239Updated last year
- Filtering and trimming of long read sequencing data☆212Updated 3 years ago
- Bacterial ribosomal RNA predictor☆272Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆339Updated 4 months ago
- Pan-genome wide association studies☆205Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- ☆270Updated 6 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆249Updated last month
- Classifier for metagenomic sequences☆269Updated 6 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- ☆227Updated last month
- k-mer based assembly evaluation☆335Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆243Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆337Updated 9 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆199Updated 4 months ago
- Scan contig files against PubMLST typing schemes☆259Updated 2 weeks ago
- BSR-Based Allele Calling Algorithm☆147Updated last week
- quality filtering tool for long reads☆381Updated 4 months ago
- De-Novo Repeat Discovery Tool☆230Updated 5 months ago
- An updated pipeline for pangenome investigation☆335Updated 2 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆291Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆223Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆233Updated 2 years ago
- Synteny and Rearrangement Identifier☆441Updated 8 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- Convert various sequence formats to FASTA☆145Updated 2 weeks ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆282Updated 5 months ago
- Fast genome analysis from unassembled short reads☆305Updated last year
- An overview of all nanopack tools☆276Updated 2 years ago
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago