sanger-pathogens / circlatorLinks
A tool to circularize genome assemblies
☆248Updated last year
Alternatives and similar repositories for circlator
Users that are interested in circlator are comparing it to the libraries listed below
Sorting:
- Bacterial ribosomal RNA predictor☆259Updated 2 years ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Classifier for metagenomic sequences☆267Updated 4 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Fast and accurately polish the genome generated by long reads.☆234Updated 10 months ago
- quality filtering tool for long reads☆374Updated 2 months ago
- Scan contig files against PubMLST typing schemes☆252Updated 3 years ago
- Pan-genome wide association studies☆205Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆278Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆334Updated 2 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆193Updated last year
- Short Read Sequence Typing for Bacterial Pathogens☆140Updated 4 years ago
- ☆267Updated 4 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆240Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆329Updated 7 months ago
- An updated pipeline for pangenome investigation☆323Updated 8 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 3 years ago
- Build a partitioned pangenome graph from microbial genomes☆285Updated 2 weeks ago
- ☆219Updated 2 weeks ago
- BSR-Based Allele Calling Algorithm☆148Updated last week
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline☆366Updated 4 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆371Updated 3 years ago
- A user-friendly workflow for phylogenomics☆221Updated 3 weeks ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆240Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆223Updated 3 weeks ago
- Fast genome analysis from unassembled short reads☆299Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆228Updated last year