Alternatives and similar repositories for nanofilt

Users that are interested in nanofilt are comparing it to the libraries listed below

• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated last year
• wdecoster / chopper
  ☆223Updated 3 weeks ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆207Updated 3 years ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆381Updated 3 months ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆334Updated last year
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆208Updated last year
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆238Updated 11 months ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆216Updated 6 months ago
• roblanf / minion_qc
  Quality control for MinION sequencing data
  ☆217Updated 2 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆335Updated 8 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆273Updated 2 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated last year
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆338Updated 3 months ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆249Updated last year
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆178Updated 2 years ago
• jtlovell / GENESPACE
  ☆228Updated 11 months ago
• PASApipeline / PASApipeline
  PASA software
  ☆197Updated 10 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆193Updated last year
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆266Updated this week
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆288Updated 2 weeks ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆373Updated 3 years ago
• DaehwanKimLab / centrifuge
  Classifier for metagenomic sequences
  ☆269Updated 6 months ago
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆229Updated 5 months ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆311Updated 2 weeks ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆162Updated 3 years ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆259Updated this week
• alekseyzimin / masurca
  ☆270Updated 6 months ago
• lbcb-sci / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆233Updated 2 years ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆238Updated last month