wdecoster / nanofilt
Filtering and trimming of long read sequencing data
☆198Updated 2 years ago
Alternatives and similar repositories for nanofilt:
Users that are interested in nanofilt are comparing it to the libraries listed below
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆274Updated 4 months ago
- quality filtering tool for long reads☆317Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆202Updated 2 years ago
- An overview of all nanopack tools☆233Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆157Updated last year
- Fast and accurately polish the genome generated by long reads.☆217Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- Nanopore data assembler☆143Updated 2 years ago
- k-mer based assembly evaluation☆302Updated 7 months ago
- haplotypic duplication identification tool☆221Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆196Updated this week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆197Updated 6 months ago
- Quality control for MinION sequencing data☆215Updated 2 years ago
- A tool to circularize genome assemblies☆236Updated 10 months ago
- ☆169Updated last week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- De-Novo Repeat Discovery Tool☆200Updated last month
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆182Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆347Updated 2 years ago
- VGP repository for the genome assembly working group☆190Updated last year
- PASA software☆183Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆242Updated 3 months ago
- Long read based human genomic structural variation detection with cuteSV☆254Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆195Updated last year
- Scan contig files against PubMLST typing schemes☆212Updated 2 years ago
- Long read / genome alignment software☆274Updated 3 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆141Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆202Updated 3 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆217Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆192Updated 5 months ago