Alternatives and similar repositories for nanofilt:

Users that are interested in nanofilt are comparing it to the libraries listed below

• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆276Updated 5 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆323Updated last year
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆205Updated 2 years ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆317Updated 9 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆219Updated 2 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆236Updated last year
• wdecoster / chopper
  ☆178Updated last month
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆239Updated 11 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆159Updated last year
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆146Updated 2 years ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆246Updated last week
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆197Updated 7 months ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆228Updated last year
• marbl / merqury
  k-mer based assembly evaluation
  ☆303Updated 8 months ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆219Updated 2 years ago
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆207Updated 2 months ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆209Updated last year
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆197Updated last year
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆208Updated 3 weeks ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆300Updated last month
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆197Updated 3 weeks ago
• VGP / vgp-assembly
  VGP repository for the genome assembly working group
  ☆190Updated last year
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆185Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆354Updated 2 years ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆191Updated 9 months ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆177Updated 5 months ago
• roblanf / minion_qc
  Quality control for MinION sequencing data
  ☆215Updated 2 years ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆279Updated 4 months ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆134Updated 4 years ago