wdecoster / nanofiltLinks
Filtering and trimming of long read sequencing data
☆209Updated 2 years ago
Alternatives and similar repositories for nanofilt
Users that are interested in nanofilt are comparing it to the libraries listed below
Sorting:
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- ☆220Updated last week
- k-mer based assembly evaluation☆333Updated last year
- quality filtering tool for long reads☆380Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 5 months ago
- Tool to plot synteny and structural rearrangements between genomes☆332Updated 8 months ago
- Quality control for MinION sequencing data☆217Updated 2 years ago
- ☆222Updated 10 months ago
- An overview of all nanopack tools☆272Updated 2 years ago
- haplotypic duplication identification tool☆269Updated last month
- Any Way to Show Multi genomic Synteny☆213Updated 5 months ago
- ☆270Updated 5 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆177Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆230Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆193Updated last year
- Bacterial ribosomal RNA predictor☆262Updated this week
- Long read / genome alignment software☆311Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆285Updated this week
- Nanopore data assembler☆162Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆335Updated 3 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆372Updated 3 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆283Updated this week
- A tool to circularize genome assemblies☆249Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆374Updated this week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago