wdecoster / nanofilt

Related projects ⓘ

Alternatives and complementary repositories for nanofilt

• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆271Updated last month
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆200Updated 2 years ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆291Updated last year
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆209Updated 10 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆213Updated last year
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆214Updated last year
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆135Updated 2 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆148Updated 11 months ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆233Updated 7 months ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆285Updated 4 months ago
• roblanf / minion_qc
  Quality control for MinION sequencing data
  ☆213Updated last year
• PASApipeline / PASApipeline
  PASA software
  ☆174Updated 11 months ago
• wdecoster / chopper
  ☆151Updated 2 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆231Updated 2 weeks ago
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆195Updated last week
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆192Updated 3 months ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆192Updated 3 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆308Updated 5 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆178Updated 9 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆128Updated last year
• tjiangHIT / cuteSV
  Long read based human genomic structural variation detection with cuteSV
  ☆250Updated 5 months ago
• klebgenomics / Kleborate
  ☆116Updated this week
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆191Updated 10 months ago
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆269Updated last month
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆107Updated last year
• VGP / vgp-assembly
  VGP repository for the genome assembly working group
  ☆188Updated last year
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆177Updated 2 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆341Updated 2 years ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆176Updated 3 weeks ago
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆263Updated this week