A genomic k-mer counter (and sequence utility) with nice features.
☆160Jul 4, 2025Updated 7 months ago
Alternatives and similar repositories for meryl
Users that are interested in meryl are comparing it to the libraries listed below
Sorting:
- k-mer based assembly evaluation☆339Jun 28, 2024Updated last year
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 4 months ago
- Evaluating genome assemblies☆115Jan 11, 2026Updated last month
- Evaluation and polishing workflows for T2T genome assemblies☆146Jul 7, 2025Updated 7 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- quality filtering tool for long reads☆394Sep 17, 2025Updated 5 months ago
- Yet another k-mer analyzer☆160Dec 30, 2025Updated 2 months ago
- Comparison of multiple long read datasets☆160Dec 2, 2025Updated 3 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated last month
- Synteny and Rearrangement Identifier☆448Apr 29, 2025Updated 10 months ago
- A genome completeness evaluation tool based on miniprot☆235Sep 18, 2025Updated 5 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆167Oct 29, 2025Updated 4 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆558Feb 14, 2024Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆240Jan 9, 2025Updated last year
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆238Dec 29, 2023Updated 2 years ago
- Pangenome-based genome inference☆156Dec 1, 2025Updated 3 months ago
- Fast genome analysis from unassembled short reads☆313Apr 8, 2024Updated last year
- ☆285Dec 29, 2025Updated 2 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆25Feb 11, 2026Updated 2 weeks ago
- Long read / genome alignment software☆310Dec 16, 2025Updated 2 months ago
- High-precision TE Annotator☆151Dec 4, 2025Updated 2 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆382Updated this week
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆370Feb 13, 2025Updated last year
- Jasmine: SV Merging Across Samples☆241Dec 20, 2024Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆103Jul 23, 2024Updated last year
- a long read simulator that can imitate many types of read problems☆267Jul 22, 2024Updated last year
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆173Apr 14, 2025Updated 10 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆191May 11, 2025Updated 9 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆175Apr 12, 2023Updated 2 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆187Oct 15, 2025Updated 4 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆237Updated this week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆743Mar 18, 2025Updated 11 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Jun 25, 2025Updated 8 months ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆106Jun 6, 2021Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆40Jan 7, 2026Updated last month
- Evaluate variant calls and its combination with k-mer multiplicity☆67Dec 2, 2022Updated 3 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆293Dec 17, 2025Updated 2 months ago