marbl / merylLinks
A genomic k-mer counter (and sequence utility) with nice features.
☆144Updated 3 months ago
Alternatives and similar repositories for meryl
Users that are interested in meryl are comparing it to the libraries listed below
Sorting:
- Evaluation and polishing workflows for T2T genome assemblies☆137Updated 3 months ago
- Comparison of multiple long read datasets☆143Updated last month
- High-precision TE Annotator☆131Updated 3 weeks ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆127Updated last month
- Yet another k-mer analyzer☆143Updated last year
- Create statistic summary of an Oxford Nanopore read dataset☆122Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆93Updated last year
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆188Updated 5 months ago
- Evaluating genome assemblies☆105Updated last month
- A genome completeness evaluation tool based on miniprot☆222Updated 3 weeks ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆113Updated 4 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆105Updated last month
- source code for EVM☆118Updated 10 months ago
- Quality control tools for nanopore sequencing data☆110Updated 11 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆145Updated 3 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆162Updated last week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆200Updated last week
- Research release basecalling models and configurations☆114Updated 4 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- De novo clustering of long transcript reads into genes☆68Updated 5 months ago
- Long read aligner☆115Updated 2 years ago
- Nanopore data assembler☆160Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 4 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆174Updated 3 weeks ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆220Updated last year
- Collection of tools for the analysis of CpG data☆95Updated 3 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Application of pan-genome for population☆112Updated 11 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year