marbl / meryl
A genomic k-mer counter (and sequence utility) with nice features.
☆128Updated 3 months ago
Alternatives and similar repositories for meryl:
Users that are interested in meryl are comparing it to the libraries listed below
- Evaluation and polishing workflows for T2T genome assemblies☆120Updated 4 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆85Updated 6 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆93Updated 2 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 4 months ago
- Comparison of multiple long read datasets☆122Updated 2 months ago
- Structural Variant Identification Method using Genome Assemblies☆100Updated 2 years ago
- Evaluating genome assemblies☆85Updated this week
- Phased assembly variant caller☆109Updated 2 months ago
- High-precision TE Annotator☆92Updated this week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆98Updated last week
- Find, circularise and annotate mitogenome from PacBio assemblies☆174Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆135Updated last month
- Long read aligner☆115Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆65Updated 2 years ago
- source code for EVM☆106Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆157Updated this week
- ☆132Updated 3 weeks ago
- Constructing a pangenome gene graph☆181Updated 7 months ago
- Pangenome-based genome inference☆122Updated this week
- Application of pan-genome for population☆102Updated 4 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆133Updated 2 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆132Updated 3 months ago
- Yet another k-mer analyzer☆127Updated 10 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated last week
- Collection of tools for the analysis of CpG data☆77Updated 2 weeks ago
- A fast whole-genome aligner based on de Bruijn graphs☆141Updated last week
- ☆108Updated this week
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year