A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
☆211Nov 18, 2022Updated 3 years ago
Alternatives and similar repositories for quickmerge
Users that are interested in quickmerge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆240Sep 6, 2024Updated last year
- Synteny and Rearrangement Identifier☆471May 20, 2026Updated 3 weeks ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆566Feb 14, 2024Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- haplotypic duplication identification tool☆288Oct 30, 2025Updated 7 months ago
- A genome completeness evaluation tool based on miniprot☆245Sep 18, 2025Updated 8 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆190May 17, 2024Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆402May 10, 2024Updated 2 years ago
- k-mer based assembly evaluation☆343May 21, 2026Updated 3 weeks ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆213Aug 21, 2024Updated last year
- ☆46May 1, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Jun 4, 2026Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆463Apr 12, 2026Updated 2 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 4 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆296May 28, 2026Updated 2 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- ⛓ Correct misassemblies using linked AND long reads☆64Mar 24, 2026Updated 2 months ago
- Nanopore data assembler☆168Mar 27, 2022Updated 4 years ago
- An accurate GFF3/GTF lift over pipeline☆542Aug 1, 2023Updated 2 years ago
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Identify and find telomeres, or telomeric repeats in a genome.☆165Nov 24, 2025Updated 6 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆180Updated this week
- Chromosome-level scaffolding using multiple references☆169Sep 8, 2024Updated last year
- 🪡Correct and scaffold assemblies using long reads☆58Apr 1, 2026Updated 2 months ago
- ☆121Updated this week
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Extensive de-novo TE Annotator☆448May 12, 2026Updated last month
- Mummer alignment tool☆561Feb 4, 2025Updated last year
- quality filtering tool for long reads☆404Sep 17, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆275Jun 26, 2025Updated 11 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆397Apr 22, 2026Updated last month
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆937Apr 3, 2026Updated 2 months ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 2 months ago
- A single molecule sequence assembler for genomes large and small.☆701Jun 3, 2026Updated last week