mikolmogorov / FlyeLinks
De novo assembler for single molecule sequencing reads using repeat graphs
☆862Updated 3 months ago
Alternatives and similar repositories for Flye
Users that are interested in Flye are comparing it to the libraries listed below
Sorting:
- The second version of the Kraken taxonomic sequence classification system☆815Updated last month
- hybrid assembly pipeline for bacterial genomes☆608Updated last year
- Plotting scripts for long read sequencing data☆495Updated last week
- Sequence correction provided by ONT Research☆474Updated last week
- Genome assembly evaluation tool☆458Updated 9 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆671Updated 5 months ago
- A single molecule sequence assembler for genomes large and small.☆690Updated last week
- Mummer alignment tool☆525Updated 6 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆544Updated last month
- adapter trimmer for Oxford Nanopore reads☆369Updated last year
- Phylogenetic orthology inference for comparative genomics☆789Updated last month
- Fast genome-wide functional annotation through orthology assignment☆645Updated 2 months ago
- Rapid haploid variant calling and core genome alignment☆542Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆527Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆631Updated 2 years ago
- Structural variation caller using third generation sequencing☆612Updated this week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆422Updated 7 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆846Updated this week
- SPAdes Genome Assembler☆860Updated last week
- Rapid prokaryotic genome annotation☆926Updated last year
- Mass screening of contigs for antimicrobial and virulence genes☆434Updated last year
- The next version of bwa-mem☆777Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆598Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆438Updated 2 years ago
- A complete pipeline for metagenomic analysis☆424Updated last week
- A flexible pipeline for complete analysis of bacterial genomes☆468Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆351Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- An accurate GFF3/GTF lift over pipeline☆498Updated 2 years ago
- ☆263Updated last week