De novo assembler for single molecule sequencing reads using repeat graphs
☆910May 2, 2025Updated 10 months ago
Alternatives and similar repositories for Flye
Users that are interested in Flye are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sequence correction provided by ONT Research☆502Dec 8, 2025Updated 3 months ago
- A single molecule sequence assembler for genomes large and small.☆699Feb 24, 2026Updated last month
- hybrid assembly pipeline for bacterial genomes☆635Jul 25, 2024Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,144Feb 13, 2026Updated last month
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- quality filtering tool for long reads☆396Sep 17, 2025Updated 6 months ago
- Genome assembly evaluation tool☆507Nov 14, 2024Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆378Apr 10, 2022Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆752Mar 18, 2025Updated last year
- adapter trimmer for Oxford Nanopore reads☆385May 8, 2024Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆667Dec 3, 2022Updated 3 years ago
- Plotting scripts for long read sequencing data☆536Mar 17, 2026Updated last week
- Fast and accurate de novo assembler for long reads☆400May 10, 2024Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆341Sep 11, 2025Updated 6 months ago
- Structural variation caller using third generation sequencing☆641Mar 10, 2026Updated 2 weeks ago
- ☆272Jun 26, 2025Updated 9 months ago
- Mummer alignment tool☆551Feb 4, 2025Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆354Jul 19, 2025Updated 8 months ago
- k-mer based assembly evaluation☆340Jun 28, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SPAdes Genome Assembler☆919Mar 17, 2026Updated last week
- A tool for Racon polishing of miniasm assemblies☆80Mar 2, 2026Updated 3 weeks ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆308Mar 18, 2024Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆209Nov 18, 2022Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆384Mar 11, 2026Updated 2 weeks ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago
- haplotypic duplication identification tool☆277Oct 30, 2025Updated 4 months ago
- a short-read polishing tool for long-read assemblies☆211Sep 19, 2025Updated 6 months ago
- Signal-level algorithms for MinION data☆595Aug 5, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Filtering and trimming of long read sequencing data☆215Jan 16, 2023Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆344Updated this week
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Long read / genome alignment software☆310Dec 16, 2025Updated 3 months ago
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year
- Oxford Nanopore's Basecaller☆806Feb 19, 2026Updated last month
- Sequence-to-graph mapper and graph generator☆473Aug 11, 2025Updated 7 months ago