mikolmogorov / Flye
De novo assembler for single molecule sequencing reads using repeat graphs
☆813Updated 6 months ago
Alternatives and similar repositories for Flye:
Users that are interested in Flye are comparing it to the libraries listed below
- Sequence correction provided by ONT Research☆440Updated 5 months ago
- adapter trimmer for Oxford Nanopore reads☆352Updated 10 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆584Updated last month
- Fast genome-wide functional annotation through orthology assignment☆596Updated 9 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆388Updated last month
- hybrid assembly pipeline for bacterial genomes☆584Updated 7 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆486Updated last week
- Genome assembly evaluation tool☆423Updated 3 months ago
- Plotting scripts for long read sequencing data☆461Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆415Updated last year
- Structural variation caller using third generation sequencing☆582Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆494Updated last year
- A complete pipeline for metagenomic analysis☆399Updated last week
- A single molecule sequence assembler for genomes large and small.☆671Updated 2 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆360Updated 6 months ago
- Rapid haploid variant calling and core genome alignment☆498Updated 7 months ago
- Rapid prokaryotic genome annotation☆877Updated 11 months ago
- Mummer alignment tool☆487Updated last month
- Fast and accurate de novo assembler for long reads☆380Updated 10 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆303Updated 2 weeks ago
- The next version of bwa-mem☆741Updated 7 months ago
- ☆235Updated 9 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆394Updated last year
- the pangenome graph builder☆419Updated last month
- Phylogenetic orthology inference for comparative genomics☆742Updated 4 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆556Updated this week
- Pilon is an automated genome assembly improvement and variant detection tool☆353Updated 2 years ago
- A comparison of different Oxford Nanopore basecallers☆316Updated 5 years ago
- Rapid large-scale prokaryote pan genome analysis☆337Updated 2 years ago
- The second version of the Kraken taxonomic sequence classification system☆764Updated this week