reference-based long read assemblies of bacterial genomes
☆51Aug 9, 2021Updated 4 years ago
Alternatives and similar repositories for Rebaler
Users that are interested in Rebaler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- quality filtering tool for long reads☆397Sep 17, 2025Updated 6 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Mar 15, 2021Updated 5 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 2 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Jan 18, 2021Updated 5 years ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Mar 27, 2026Updated 2 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆34Oct 17, 2023Updated 2 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 3 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆912Updated this week
- Yet Another Chimeric Read Detector☆85Nov 7, 2024Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated 2 years ago
- Minimal but speedy quality control for nanopore reads in Rust☆137Sep 16, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Analysis components from Oxford Nanopore Research☆97Sep 4, 2024Updated last year
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆12Dec 11, 2019Updated 6 years ago
- ☆25Feb 21, 2017Updated 9 years ago
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Sep 7, 2019Updated 6 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A tool for removing redundant genomes from a set of assemblies☆79Sep 10, 2025Updated 7 months ago
- Sequence correction provided by ONT Research☆503Dec 8, 2025Updated 4 months ago
- Bifrost graph gene caller.☆98Mar 29, 2026Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 2 months ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63May 18, 2020Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Aug 10, 2021Updated 4 years ago