rrwick / RebalerLinks
reference-based long read assemblies of bacterial genomes
☆50Updated 4 years ago
Alternatives and similar repositories for Rebaler
Users that are interested in Rebaler are comparing it to the libraries listed below
Sorting:
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆61Updated 3 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Recombination-free trees☆60Updated 3 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated last week
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Colinear block visualisation tool☆31Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- ☆37Updated 3 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆39Updated last month
- Split k-mer analysis – version 2☆92Updated last month
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- ☆53Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Gene-flank analysis tool☆30Updated 9 months ago
- Graph-based assembly phasing☆87Updated 4 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 5 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- A new high-resolution long-read metagenome assembler for even noisy reads☆94Updated this week