rrwick / RebalerLinks
reference-based long read assemblies of bacterial genomes
☆51Updated 4 years ago
Alternatives and similar repositories for Rebaler
Users that are interested in Rebaler are comparing it to the libraries listed below
Sorting:
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Updated 7 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Recombination-free trees☆63Updated 5 months ago
- Split Kmer Analysis☆67Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- ☆37Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 5 years ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Gene-flank analysis tool☆37Updated last year
- Predict MLST directly from uncorrected long reads☆27Updated 3 months ago
- Graph-based assembly phasing☆90Updated 2 months ago
- Split k-mer analysis – version 2☆104Updated last week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- Colinear block visualisation tool☆31Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Identify phage regions in bacterial genomes for masking purposes