Minimal but speedy quality control for nanopore reads in Rust
☆139Sep 16, 2024Updated last year
Alternatives and similar repositories for nanoq
Users that are interested in nanoq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assemble bacterial isolate genomes from Nanopore reads☆135Jan 22, 2025Updated last year
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 9 months ago
- quality filtering tool for long reads☆405Sep 17, 2025Updated 9 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated 10 months ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Randomly subsample sequencing reads or alignments☆270Updated this week
- Ultra-fast preprocessing and quality control for long-read sequencing data☆232Sep 6, 2025Updated 10 months ago
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated 3 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆187Jul 1, 2026Updated last week
- Remove human reads from a sequencing run☆48Jun 29, 2026Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆233Apr 27, 2026Updated 2 months ago
- ☆257Jul 1, 2026Updated last week
- Read alignment statistics for metagenomics☆400Updated this week
- Create statistic summary of an Oxford Nanopore read dataset☆137Nov 4, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Graph-based assembly phasing☆99Nov 25, 2025Updated 7 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆286Oct 18, 2024Updated last year
- Plotting scripts for long read sequencing data☆558Jun 15, 2026Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆345Sep 11, 2025Updated 10 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆661Updated this week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- Fast FASTX parsing and k-mer methods in Rust☆212Jun 22, 2026Updated 3 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆942Apr 3, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 4 years ago
- Split k-mer analysis – version 2☆105Updated this week
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆218Apr 24, 2026Updated 2 months ago
- Bifrost graph gene caller.☆98Jun 18, 2026Updated 3 weeks ago
- Quality control tools for nanopore sequencing data☆114Oct 26, 2024Updated last year
- Reorients assembled microbial sequences☆142Jun 30, 2026Updated 2 weeks ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 9 months ago
- bioinformatics toolkit in rust☆107May 14, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆259May 13, 2026Updated 2 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Apr 22, 2026Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆116Updated this week
- Aligns short reads using dynamic seed size with strobemers☆203Jul 4, 2026Updated last week
- ☆29Sep 28, 2021Updated 4 years ago