esteinig / nanoqLinks
Minimal but speedy quality control for nanopore reads in Rust
☆137Updated last year
Alternatives and similar repositories for nanoq
Users that are interested in nanoq are comparing it to the libraries listed below
Sorting:
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆162Updated this week
- Create a tree using Mash distances☆171Updated last year
- a short-read polishing tool for long-read assemblies☆192Updated 2 weeks ago
- Interactive quality assessment of genome assemblies☆109Updated 5 months ago
- Aligns short reads using dynamic seed size with strobemers☆177Updated last week
- Create statistic summary of an Oxford Nanopore read dataset☆123Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆174Updated 3 weeks ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated this week
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆112Updated last year
- A fast whole-genome aligner based on de Bruijn graphs☆152Updated 3 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆127Updated 8 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆221Updated last month
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated last month
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- Metagenomic classification of long-read sequencing data☆94Updated 3 weeks ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 10 months ago
- Nanopore data assembler☆161Updated 3 years ago
- Assembled Genomes Compressor☆168Updated 10 months ago
- Research release basecalling models and configurations☆114Updated 4 months ago
- Analysis components from Oxford Nanopore Research☆95Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆147Updated last week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆113Updated 4 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆143Updated last month
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 8 months ago
- The ARTIC fieldbioinformatics pipeline☆125Updated 3 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆203Updated 2 weeks ago
- seqfu - Sequece Fastx Utilities☆120Updated last week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- SKESA assembler☆123Updated 11 months ago
- A repository for collecting GPU basecalling stats☆64Updated last week