esteinig / nanoqView external linksLinks
Minimal but speedy quality control for nanopore reads in Rust
☆137Sep 16, 2024Updated last year
Alternatives and similar repositories for nanoq
Users that are interested in nanoq are comparing it to the libraries listed below
Sorting:
- Assemble bacterial isolate genomes from Nanopore reads☆127Jan 22, 2025Updated last year
- a short-read polishing tool for long-read assemblies☆206Sep 19, 2025Updated 4 months ago
- quality filtering tool for long reads☆389Sep 17, 2025Updated 4 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆218Sep 6, 2025Updated 5 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆43Aug 20, 2025Updated 5 months ago
- High-quality Nanopore-only genome polisher☆69Aug 16, 2024Updated last year
- Genome size estimation from long read overlaps☆80Dec 1, 2025Updated 2 months ago
- ☆232Feb 3, 2026Updated last week
- Randomly subsample sequencing reads or alignments☆254Feb 9, 2026Updated last week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆170Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆216Feb 4, 2026Updated last week
- Create statistic summary of an Oxford Nanopore read dataset☆131Nov 4, 2022Updated 3 years ago
- Remove human reads from a sequencing run☆47Dec 16, 2025Updated 2 months ago
- Read alignment statistics for metagenomics☆387Jan 16, 2026Updated 3 weeks ago
- Graph-based assembly phasing☆91Nov 25, 2025Updated 2 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Rust bindings to minimap2 library☆108Feb 2, 2026Updated 2 weeks ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆339Sep 11, 2025Updated 5 months ago
- Plotting scripts for long read sequencing data☆532Dec 4, 2025Updated 2 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆606Feb 9, 2026Updated last week
- Fast FASTX parsing and k-mer methods in Rust☆209Jan 27, 2026Updated 2 weeks ago
- bioinformatics toolkit in rust☆93Sep 28, 2025Updated 4 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆205Sep 22, 2023Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆290Feb 3, 2026Updated last week
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated this week
- Aligns short reads using dynamic seed size with strobemers☆192Feb 8, 2026Updated last week
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 4 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆903May 2, 2025Updated 9 months ago
- Bifrost graph gene caller.☆98Jan 20, 2026Updated 3 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 3 weeks ago
- ☆14Sep 11, 2023Updated 2 years ago
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated 10 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Oct 12, 2025Updated 4 months ago
- PEPPER-Margin-DeepVariant☆257Jan 12, 2024Updated 2 years ago
- ☆29Sep 28, 2021Updated 4 years ago
- Split k-mer analysis – version 2☆104Jan 29, 2026Updated 2 weeks ago
- a long read simulator that can imitate many types of read problems☆267Jul 22, 2024Updated last year