marbl / merqury
k-mer based assembly evaluation
☆283Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for merqury
- Filtering and trimming of long read sequencing data☆189Updated last year
- haplotypic duplication identification tool☆209Updated 10 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆267Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆213Updated last year
- De-Novo Repeat Discovery Tool☆194Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆169Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆201Updated 10 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆200Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆146Updated 11 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆171Updated 3 years ago
- VGP repository for the genome assembly working group☆188Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆175Updated 2 months ago
- Nanopore data assembler☆135Updated 2 years ago
- A tool to circularize genome assemblies☆233Updated 7 months ago
- quality filtering tool for long reads☆289Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆191Updated 2 months ago
- PASA software☆174Updated 10 months ago
- ☆150Updated 2 months ago
- Fast genome analysis from unassembled short reads☆258Updated 7 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆230Updated this week
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆192Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆182Updated 5 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated 3 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆191Updated 9 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆192Updated last week
- Long read / genome alignment software☆257Updated this week
- Long read based human genomic structural variation detection with cuteSV☆249Updated 5 months ago
- An overview of all nanopack tools☆210Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆282Updated last week
- Synteny and Rearrangement Identifier☆340Updated last week