Alternatives and similar repositories for merqury

Users that are interested in merqury are comparing it to the libraries listed below

• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆235Updated 8 months ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆257Updated last year
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆209Updated 2 years ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆409Updated 4 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated 11 months ago
• lbcb-sci / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆226Updated last year
• wdecoster / chopper
  ☆210Updated this week
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆201Updated 2 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆206Updated 2 years ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆365Updated this week
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆207Updated 2 months ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆218Updated last year
• PASApipeline / PASApipeline
  PASA software
  ☆193Updated 7 months ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆297Updated 10 months ago
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆217Updated last month
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆209Updated last year
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆320Updated 5 months ago
• zengxiaofei / HapHiC
  HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
  ☆228Updated 3 weeks ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆302Updated last month
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆359Updated last week
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆216Updated last year
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆191Updated last year
• jtlovell / GENESPACE
  ☆216Updated 7 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆272Updated this week
• lbcb-sci / herro
  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …
  ☆227Updated this week
• alekseyzimin / masurca
  ☆261Updated 2 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆219Updated this week
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆161Updated 3 years ago
• VGP / vgp-assembly
  VGP repository for the genome assembly working group
  ☆193Updated 4 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆368Updated 3 years ago