marbl / merquryLinks
k-mer based assembly evaluation
☆317Updated last year
Alternatives and similar repositories for merqury
Users that are interested in merqury are comparing it to the libraries listed below
Sorting:
- Filtering and trimming of long read sequencing data☆207Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆281Updated 9 months ago
- haplotypic duplication identification tool☆249Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆227Updated 6 months ago
- Long read based human genomic structural variation detection with cuteSV☆268Updated last month
- ☆200Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆225Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆215Updated 10 months ago
- Any Way to Show Multi genomic Synteny☆199Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆400Updated 2 months ago
- Long read / genome alignment software☆291Updated 8 months ago
- An overview of all nanopack tools☆261Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆352Updated 3 weeks ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆206Updated 3 weeks ago
- De-Novo Repeat Discovery Tool☆216Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆170Updated last year
- quality filtering tool for long reads☆351Updated last year
- Fast genome analysis from unassembled short reads☆292Updated last year
- PASA software☆188Updated 5 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆273Updated 2 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 8 months ago
- A genome completeness evaluation tool based on miniprot☆216Updated 2 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆233Updated 11 months ago
- VGP repository for the genome assembly working group☆193Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 2 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆304Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆313Updated 3 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆217Updated last month