k-mer based assembly evaluation
☆346May 21, 2026Updated last month
Alternatives and similar repositories for merqury
Users that are interested in merqury are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A genomic k-mer counter (and sequence utility) with nice features.☆169Jun 3, 2026Updated last month
- haplotypic duplication identification tool☆289Oct 30, 2025Updated 8 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆401Apr 22, 2026Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆567Feb 14, 2024Updated 2 years ago
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A gap-closing software tool that uses long reads to enhance genome assembly.☆241Sep 6, 2024Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆788May 31, 2026Updated last month
- Long read / genome alignment software☆328Dec 16, 2025Updated 6 months ago
- Fast and accurately polish the genome generated by long reads.☆244Jan 9, 2025Updated last year
- Synteny and Rearrangement Identifier☆474Jun 20, 2026Updated 2 weeks ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆296May 28, 2026Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆248Jun 20, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An accurate GFF3/GTF lift over pipeline☆546Aug 1, 2023Updated 2 years ago
- Evaluating genome assemblies☆122Mar 3, 2026Updated 4 months ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Identify and find telomeres, or telomeric repeats in a genome.☆167Nov 24, 2025Updated 7 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆464Jun 17, 2026Updated 2 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆197May 11, 2025Updated last year
- Fast and accurate de novo assembler for long reads☆404May 10, 2024Updated 2 years ago
- Sequence-to-graph mapper and graph generator☆482Aug 11, 2025Updated 10 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆157Jun 26, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Long read based human genomic structural variation detection with cuteSV☆290Mar 26, 2026Updated 3 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆69Dec 2, 2022Updated 3 years ago
- VGP repository for the genome assembly working group☆193Mar 31, 2026Updated 3 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 6 months ago
- Fast genome analysis from unassembled short reads☆323Apr 8, 2024Updated 2 years ago
- Extensive de-novo TE Annotator☆455May 12, 2026Updated last month
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆111Jul 23, 2024Updated last year
- Reference-free profiling of polyploid genomes☆144Oct 2, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- De-Novo Repeat Discovery Tool☆242Jun 11, 2026Updated 3 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆113Jun 6, 2021Updated 5 years ago
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- ☆78Jun 12, 2020Updated 6 years ago
- Fast and frugal disk based k-mer counter☆335May 8, 2026Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆212Nov 18, 2022Updated 3 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Jun 21, 2026Updated 2 weeks ago