Fast and accurate de novo assembler for long reads
☆402May 10, 2024Updated 2 years ago
Alternatives and similar repositories for NextDenovo
Users that are interested in NextDenovo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- haplotypic duplication identification tool☆288Oct 30, 2025Updated 7 months ago
- k-mer based assembly evaluation☆343May 21, 2026Updated 3 weeks ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆530Sep 27, 2023Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆240Sep 6, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆780May 31, 2026Updated last week
- Nanopore data assembler☆168Mar 27, 2022Updated 4 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆566Feb 14, 2024Updated 2 years ago
- 3D de novo assembly (3D DNA) pipeline☆226Nov 29, 2023Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆461Apr 12, 2026Updated 2 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆397Apr 22, 2026Updated last month
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216May 12, 2026Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- De novo assembler for single molecule sequencing reads using repeat graphs☆937Apr 3, 2026Updated 2 months ago
- Extensive de-novo TE Annotator☆448May 12, 2026Updated last month
- Long read based human genomic structural variation detection with cuteSV☆289Mar 26, 2026Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆190May 17, 2024Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- A single molecule sequence assembler for genomes large and small.☆701Jun 3, 2026Updated last week
- Synteny and Rearrangement Identifier☆471May 20, 2026Updated 3 weeks ago
- Long read / genome alignment software☆319Dec 16, 2025Updated 5 months ago
- Mummer alignment tool☆561Feb 4, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆174Oct 29, 2025Updated 7 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆383Feb 13, 2025Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆103Apr 7, 2026Updated 2 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆295May 28, 2026Updated 2 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆217Jan 17, 2024Updated 2 years ago
- Fast genome analysis from unassembled short reads☆322Apr 8, 2024Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆542Aug 1, 2023Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 5 months ago
- Sequence-to-graph mapper and graph generator☆481Aug 11, 2025Updated 10 months ago
- Ultra-fast de novo assembler using long noisy reads☆136Feb 24, 2021Updated 5 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- quality filtering tool for long reads☆404Sep 17, 2025Updated 8 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,197May 19, 2026Updated 3 weeks ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago