Alternatives and similar repositories for NextDenovo

Users that are interested in NextDenovo are comparing it to the libraries listed below

• oushujun / EDTA
  Extensive de-novo TE Annotator
  ☆392Updated 2 weeks ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆396Updated 2 months ago
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆213Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆235Updated 4 years ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆259Updated 6 months ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆365Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆367Updated 3 years ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆416Updated 5 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆292Updated 9 months ago
• pangenome / pggb
  the pangenome graph builder
  ☆439Updated last month
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆311Updated 3 months ago
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆352Updated 2 weeks ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆227Updated 6 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆356Updated last week
• usadellab / Trimmomatic
  ☆256Updated last year
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆312Updated 2 years ago
• mummer4 / mummer
  Mummer alignment tool
  ☆518Updated 5 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆516Updated last year
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆304Updated last year
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆265Updated 2 weeks ago
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆490Updated last year
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆465Updated last month
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆345Updated last year
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆269Updated 5 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆351Updated last year
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆376Updated last month
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆285Updated last year
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆286Updated this week
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆206Updated 2 weeks ago
• aquaskyline / SOAPdenovo2
  Next generation sequencing reads de novo assembler.
  ☆234Updated last year