broadinstitute / pilonLinks
Pilon is an automated genome assembly improvement and variant detection tool
☆372Updated 3 years ago
Alternatives and similar repositories for pilon
Users that are interested in pilon are comparing it to the libraries listed below
Sorting:
- quality filtering tool for long reads☆380Updated 2 months ago
- adapter trimmer for Oxford Nanopore reads☆376Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆335Updated 3 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆439Updated last month
- Eukaryotic Genome Annotation Pipeline☆368Updated 5 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆360Updated 4 months ago
- Synteny and Rearrangement Identifier☆428Updated 7 months ago
- An overview of all nanopack tools☆272Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆397Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆294Updated last year
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Plotting scripts for long read sequencing data☆517Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆397Updated 5 months ago
- Tool to plot synteny and structural rearrangements between genomes☆332Updated 8 months ago
- Sequence correction provided by ONT Research☆487Updated 3 months ago
- TransDecoder source☆299Updated 2 months ago
- Extensive de-novo TE Annotator☆417Updated 2 months ago
- Scan contig files against PubMLST typing schemes☆253Updated this week
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆374Updated this week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆283Updated this week
- Classifier for metagenomic sequences☆267Updated 5 months ago
- An accurate GFF3/GTF lift over pipeline☆514Updated 2 years ago
- Genome assembly evaluation tool☆485Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆543Updated last year
- Bacterial ribosomal RNA predictor☆262Updated this week
- ☆270Updated 5 months ago
- Rapid large-scale prokaryote pan genome analysis☆362Updated last month
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year