Pilon is an automated genome assembly improvement and variant detection tool
☆381Apr 10, 2022Updated 4 years ago
Alternatives and similar repositories for pilon
Users that are interested in pilon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated 2 years ago
- A single molecule sequence assembler for genomes large and small.☆701Jun 3, 2026Updated last week
- hybrid assembly pipeline for bacterial genomes☆643Jul 25, 2024Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆354Jul 19, 2025Updated 10 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆937Apr 3, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Sequence correction provided by ONT Research☆517May 20, 2026Updated 3 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆240Dec 29, 2023Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Mummer alignment tool☆561Feb 4, 2025Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆673Dec 3, 2022Updated 3 years ago
- Ultra-fast de novo assembler using long noisy reads☆136Feb 24, 2021Updated 5 years ago
- ☆275Jun 26, 2025Updated 11 months ago
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- Genome assembly evaluation tool☆513Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆211Nov 18, 2022Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆566Feb 14, 2024Updated 2 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆530Sep 27, 2023Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,197May 19, 2026Updated 3 weeks ago
- a short-read polishing tool for long-read assemblies☆217Sep 19, 2025Updated 8 months ago
- SPAdes Genome Assembler☆942Updated this week
- Filtering and trimming of long read sequencing data☆217Jan 16, 2023Updated 3 years ago
- Chromosome-level scaffolding using multiple references☆169Sep 8, 2024Updated last year
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A gap-closing software tool that uses long reads to enhance genome assembly.☆240Sep 6, 2024Updated last year
- quality filtering tool for long reads☆404Sep 17, 2025Updated 8 months ago
- Microbial RNA annotation☆296Apr 12, 2026Updated 2 months ago
- Fast genome analysis from unassembled short reads☆322Apr 8, 2024Updated 2 years ago
- adapter trimmer for Oxford Nanopore reads☆384May 8, 2024Updated 2 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆463Dec 16, 2025Updated 5 months ago
- Synteny and Rearrangement Identifier☆471May 20, 2026Updated 3 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆461Apr 12, 2026Updated 2 months ago
- Fast and accurate de novo assembler for long reads☆402May 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Eukaryotic Genome Annotation Pipeline☆387Jun 7, 2026Updated last week
- haplotypic duplication identification tool☆288Oct 30, 2025Updated 7 months ago
- Signal-level algorithms for MinION data☆597Aug 5, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆343Sep 11, 2025Updated 9 months ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- k-mer based assembly evaluation☆343May 21, 2026Updated 3 weeks ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago