broadinstitute / pilon
Pilon is an automated genome assembly improvement and variant detection tool
☆348Updated 2 years ago
Alternatives and similar repositories for pilon:
Users that are interested in pilon are comparing it to the libraries listed below
- quality filtering tool for long reads☆322Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆315Updated 9 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆219Updated 4 years ago
- Fast and accurate de novo assembler for long reads☆380Updated 9 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆326Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆276Updated 9 months ago
- Synteny and Rearrangement Identifier☆364Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 4 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆244Updated 3 months ago
- A tool to circularize genome assemblies☆237Updated 10 months ago
- TransDecoder source☆285Updated 5 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆248Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆218Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆298Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline☆333Updated last month
- Scan contig files against PubMLST typing schemes☆215Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆261Updated 3 weeks ago
- An overview of all nanopack tools☆233Updated last year
- Plotting scripts for long read sequencing data☆460Updated last month
- adapter trimmer for Oxford Nanopore reads☆351Updated 9 months ago
- Bacterial ribosomal RNA predictor☆236Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆492Updated last year
- Fast and accurately polish the genome generated by long reads.☆217Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆360Updated 6 months ago
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- Sequence correction provided by ONT Research☆437Updated 4 months ago
- Classifier for metagenomic sequences☆255Updated 4 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆135Updated 3 years ago
- Genome assembly evaluation tool☆422Updated 3 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆303Updated this week