wdecoster / nanostatLinks
Create statistic summary of an Oxford Nanopore read dataset
☆113Updated 2 years ago
Alternatives and similar repositories for nanostat
Users that are interested in nanostat are comparing it to the libraries listed below
Sorting:
- A genomic k-mer counter (and sequence utility) with nice features.☆137Updated 3 months ago
- Comparison of multiple long read datasets☆132Updated 3 weeks ago
- Evaluation and polishing workflows for T2T genome assemblies☆128Updated 7 months ago
- Structural Variant Identification Method using Genome Assemblies☆117Updated 2 years ago
- haplotypic duplication identification tool☆244Updated last year
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆91Updated 10 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆167Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 8 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆214Updated 9 months ago
- A genome completeness evaluation tool based on miniprot☆213Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆182Updated 3 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆155Updated this week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆151Updated 2 months ago
- Nanopore data assembler☆156Updated 3 years ago
- Chromosome-level scaffolding using multiple references☆160Updated 8 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Metagenomic classification of long-read sequencing data☆83Updated 3 weeks ago
- Quality control tools for nanopore sequencing data☆107Updated 7 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆150Updated 2 years ago
- Filtering and trimming of long read sequencing data☆205Updated 2 years ago
- Constructing a pangenome gene graph☆188Updated this week
- Yet another k-mer analyzer☆138Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆136Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆188Updated 2 weeks ago
- ☆194Updated last month
- A fast whole-genome aligner based on de Bruijn graphs☆150Updated 3 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆145Updated 4 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 7 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 9 months ago