wdecoster / nanostat
Create statistic summary of an Oxford Nanopore read dataset
☆111Updated 2 years ago
Alternatives and similar repositories for nanostat:
Users that are interested in nanostat are comparing it to the libraries listed below
- Comparison of multiple long read datasets☆126Updated 3 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆134Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆142Updated this week
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- Nanopore data assembler☆147Updated 3 years ago
- Structural Variant Identification Method using Genome Assemblies☆107Updated 2 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆177Updated 3 weeks ago
- haplotypic duplication identification tool☆228Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 6 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆204Updated 6 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆140Updated 3 months ago
- Create a tree using Mash distances☆159Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆122Updated 5 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆86Updated 8 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆111Updated last year
- ☆140Updated last week
- Constructing a pangenome gene graph☆184Updated 8 months ago
- Tools for plotting methylation data in various ways☆144Updated last week
- A fast whole-genome aligner based on de Bruijn graphs☆144Updated last month
- Long read aligner☆115Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆132Updated last year
- Analysis components from Oxford Nanopore Research☆93Updated 6 months ago
- Metagenomic classification of long-read sequencing data☆77Updated last week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆141Updated last month
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆99Updated 3 weeks ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 4 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 10 months ago