Nextomics / NextPolish
Fast and accurately polish the genome generated by long reads.
☆217Updated 3 weeks ago
Alternatives and similar repositories for NextPolish:
Users that are interested in NextPolish are comparing it to the libraries listed below
- Any Way to Show Multi genomic Synteny☆171Updated 3 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆195Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated 3 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆195Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆200Updated 3 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆240Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆155Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆174Updated last week
- Nanopore data assembler☆140Updated 2 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆152Updated this week
- ☆165Updated 4 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆255Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆294Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 8 months ago
- ☆197Updated this week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- A bioinformatics tool for working with modified bases☆163Updated 3 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆133Updated 3 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆202Updated 2 years ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆247Updated last month
- A gap-closing software tool that uses long reads to enhance genome assembly.☆191Updated 4 months ago
- Ultra-fast de novo assembler using long noisy reads☆131Updated 3 years ago
- Synteny and Rearrangement Identifier☆357Updated last month
- A minimap2 frontend for PacBio native data formats☆178Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆138Updated last year
- 3D de novo assembly (3D DNA) pipeline☆207Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆162Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆114Updated 3 weeks ago
- Filtering and trimming of long read sequencing data☆197Updated 2 years ago