Alternatives and similar repositories for NextPolish

Users that are interested in NextPolish are comparing it to the libraries listed below

• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆215Updated 7 months ago
• wdecoster / chopper
  ☆231Updated this week
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆217Updated 7 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆178Updated 2 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated 2 years ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆177Updated last year
• marbl / merqury
  k-mer based assembly evaluation
  ☆334Updated last year
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆165Updated 3 years ago
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆221Updated 2 years ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆229Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆233Updated 4 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆207Updated 3 years ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆275Updated 3 months ago
• aaranyue / quarTeT
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆164Updated 3 months ago
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆191Updated 2 weeks ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆213Updated 3 years ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated last year
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆252Updated last year
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆340Updated 10 months ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆208Updated last year
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆237Updated last year
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆248Updated last month
• PASApipeline / PASApipeline
  PASA software
  ☆197Updated 11 months ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆199Updated 4 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆280Updated 2 years ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆191Updated 8 months ago
• jtlovell / GENESPACE
  ☆232Updated last year
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆142Updated 6 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆173Updated 2 years ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆159Updated 11 months ago