Alternatives and similar repositories for NextPolish:

Users that are interested in NextPolish are comparing it to the libraries listed below

• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆176Updated 6 months ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆181Updated this week
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆150Updated 3 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆200Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆204Updated last month
• wdecoster / chopper
  ☆185Updated last month
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆303Updated 2 weeks ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆206Updated 2 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆210Updated 2 weeks ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆160Updated last year
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 3 years ago
• zengxiaofei / HapHiC
  HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
  ☆183Updated this week
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆200Updated last month
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆184Updated 11 months ago
• jtlovell / GENESPACE
  ☆204Updated 3 months ago
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆209Updated last year
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆166Updated 2 weeks ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆180Updated last month
• aaranyue / quarTeT
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆130Updated last month
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆146Updated last month
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆199Updated 8 months ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆376Updated last week
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆236Updated last year
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆210Updated 4 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆187Updated last year
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆149Updated 2 years ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆249Updated last week
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆241Updated last year
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆276Updated 6 months ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆135Updated 4 years ago