Alternatives and similar repositories for NextPolish

Users that are interested in NextPolish are comparing it to the libraries listed below

• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆212Updated 4 months ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆209Updated 3 months ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆177Updated last year
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆261Updated this week
• marbl / merqury
  k-mer based assembly evaluation
  ☆331Updated last year
• wdecoster / chopper
  ☆216Updated last month
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆161Updated 3 years ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆219Updated last year
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated last year
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆173Updated last year
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆227Updated last month
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆208Updated 2 years ago
• aaranyue / quarTeT
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆154Updated this week
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆218Updated last year
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆229Updated 10 months ago
• jtlovell / GENESPACE
  ☆218Updated 9 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆204Updated 2 years ago
• PASApipeline / PASApipeline
  PASA software
  ☆194Updated 8 months ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆148Updated 8 months ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆135Updated 4 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 4 years ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆189Updated 5 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆326Updated 6 months ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆248Updated last year
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆220Updated 3 months ago
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆164Updated 3 months ago
• lbcb-sci / herro
  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …
  ☆231Updated 2 weeks ago
• baoxingsong / AnchorWave
  Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
  ☆177Updated 2 weeks ago
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆183Updated last month