Fast and accurately polish the genome generated by long reads.
☆243Jan 9, 2025Updated last year
Alternatives and similar repositories for NextPolish
Users that are interested in NextPolish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and accurate de novo assembler for long reads☆400May 10, 2024Updated last year
- A gap-closing software tool that uses long reads to enhance genome assembly.☆235Sep 6, 2024Updated last year
- k-mer based assembly evaluation☆342Jun 28, 2024Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- haplotypic duplication identification tool☆283Oct 30, 2025Updated 6 months ago
- Nanopore data assembler☆167Mar 27, 2022Updated 4 years ago
- ☆273Jun 26, 2025Updated 10 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆768Apr 15, 2026Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆462Mar 17, 2026Updated last month
- Repeat-aware polishing genomes assembled using HiFi long reads☆101Apr 7, 2026Updated 3 weeks ago
- Mummer alignment tool☆558Feb 4, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- Fast genome analysis from unassembled short reads☆318Apr 8, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 7 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 4 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 9 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆458Apr 12, 2026Updated 2 weeks ago
- quality filtering tool for long reads☆403Sep 17, 2025Updated 7 months ago
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generate an interactive dot plot from mummer or minimap alignments☆215Jan 17, 2024Updated 2 years ago
- ☆71Apr 28, 2020Updated 6 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆530Sep 27, 2023Updated 2 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆167Oct 29, 2025Updated 6 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- 3D de novo assembly (3D DNA) pipeline☆224Nov 29, 2023Updated 2 years ago
- Chromosome-level scaffolding using multiple references☆166Sep 8, 2024Updated last year
- use long sequenced reads to close gaps in assemblies☆40Sep 4, 2018Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆389Apr 22, 2026Updated last week
- Long read based human genomic structural variation detection with cuteSV☆286Mar 26, 2026Updated last month
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆294Feb 25, 2026Updated 2 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- A single molecule sequence assembler for genomes large and small.☆700Feb 24, 2026Updated 2 months ago
- ☆78Jun 12, 2020Updated 5 years ago
- Long read / genome alignment software☆316Dec 16, 2025Updated 4 months ago