Fast and accurately polish the genome generated by long reads.
☆244Jan 9, 2025Updated last year
Alternatives and similar repositories for NextPolish
Users that are interested in NextPolish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and accurate de novo assembler for long reads☆403May 10, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆240Sep 6, 2024Updated last year
- k-mer based assembly evaluation☆344May 21, 2026Updated last month
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆242Dec 29, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for fast and flexible genome assembly scaffolding and improvement☆567Feb 14, 2024Updated 2 years ago
- haplotypic duplication identification tool☆289Oct 30, 2025Updated 8 months ago
- Nanopore data assembler☆168Mar 27, 2022Updated 4 years ago
- ☆277Jun 26, 2025Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆211Nov 18, 2022Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆784May 31, 2026Updated last month
- Synteny and Rearrangement Identifier☆474Jun 20, 2026Updated last week
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 2 months ago
- Mummer alignment tool☆564Feb 4, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆217May 12, 2026Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆298May 9, 2024Updated 2 years ago
- Fast genome analysis from unassembled short reads☆323Apr 8, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆248Jun 20, 2026Updated last week
- Pilon is an automated genome assembly improvement and variant detection tool☆382Apr 10, 2022Updated 4 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆169Jun 3, 2026Updated 3 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆464Jun 17, 2026Updated last week
- quality filtering tool for long reads☆404Sep 17, 2025Updated 9 months ago
- De novo genome assembler for long uncorrected reads☆232Nov 15, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- ☆71Apr 28, 2020Updated 6 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆529Sep 27, 2023Updated 2 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆176Jun 23, 2026Updated last week
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- 3D de novo assembly (3D DNA) pipeline☆225Nov 29, 2023Updated 2 years ago
- Chromosome-level scaffolding using multiple references☆169Sep 8, 2024Updated last year
- use long sequenced reads to close gaps in assemblies☆40Sep 4, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆398Apr 22, 2026Updated 2 months ago
- Long read based human genomic structural variation detection with cuteSV☆290Mar 26, 2026Updated 3 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆296May 28, 2026Updated last month
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- A single molecule sequence assembler for genomes large and small.☆701Jun 18, 2026Updated last week
- ☆78Jun 12, 2020Updated 6 years ago
- Long read / genome alignment software☆325Dec 16, 2025Updated 6 months ago