wdecoster / chopperLinks
☆218Updated 3 weeks ago
Alternatives and similar repositories for chopper
Users that are interested in chopper are comparing it to the libraries listed below
Sorting:
- Ultra-fast preprocessing and quality control for long-read sequencing data☆195Updated 2 months ago
- ☆222Updated 9 months ago
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆176Updated last year
- Fast and accurately polish the genome generated by long reads.☆236Updated 10 months ago
- Nanopore data assembler☆162Updated 3 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆232Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆199Updated 3 weeks ago
- Foreign Contamination Screening caller scripts and documentation☆150Updated 8 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 3 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated 2 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 4 months ago
- A genome completeness evaluation tool based on miniprot☆228Updated 2 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 6 months ago
- Tool to plot synteny and structural rearrangements between genomes☆329Updated 7 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Any Way to Show Multi genomic Synteny☆210Updated 4 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- A bioinformatics tool for working with modified bases☆225Updated 2 months ago
- snipit: summarise snps relative to your reference sequence☆162Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆151Updated 9 months ago
- k-mer based assembly evaluation☆332Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆230Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Earl Grey: A fully automated TE curation and annotation pipeline☆186Updated 2 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆181Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆165Updated 4 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆239Updated last year