wdecoster / chopper
☆177Updated last month
Alternatives and similar repositories for chopper:
Users that are interested in chopper are comparing it to the libraries listed below
- ☆199Updated last month
- Fast and accurately polish the genome generated by long reads.☆219Updated 2 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆159Updated this week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆159Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆197Updated last year
- Nanopore data assembler☆145Updated 2 years ago
- A bioinformatics tool for working with modified bases☆174Updated last week
- A genome completeness evaluation tool based on miniprot☆194Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆300Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆143Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 4 years ago
- ☆88Updated 2 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆111Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆176Updated 2 weeks ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Any Way to Show Multi genomic Synteny☆176Updated 4 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆136Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 10 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆138Updated 3 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Version 5 of the CAFE phylogenetics software☆128Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆138Updated 2 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆170Updated 2 weeks ago
- Jasmine: SV Merging Across Samples☆207Updated 3 months ago
- A minimap2 frontend for PacBio native data formats☆186Updated 3 weeks ago
- Research release basecalling models and configurations☆107Updated 9 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆117Updated 2 months ago
- Constructing a pangenome gene graph☆183Updated 8 months ago
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago