lbcb-sci / raconLinks
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
☆227Updated last year
Alternatives and similar repositories for racon
Users that are interested in racon are comparing it to the libraries listed below
Sorting:
- haplotypic duplication identification tool☆260Updated last year
- k-mer based assembly evaluation☆331Updated last year
- ☆216Updated last month
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- Nanopore data assembler☆161Updated 3 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆219Updated last year
- Long read / genome alignment software☆303Updated 11 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 5 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆160Updated 6 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆238Updated last year
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆231Updated 2 weeks ago
- A genome completeness evaluation tool based on miniprot☆225Updated last month
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated last year
- Jasmine: SV Merging Across Samples☆228Updated 10 months ago
- Fast genome analysis from unassembled short reads☆299Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆206Updated last year
- quality filtering tool for long reads☆373Updated last month
- VGP repository for the genome assembly working group☆193Updated 5 months ago
- Long read based human genomic structural variation detection with cuteSV☆273Updated last month
- De-Novo Repeat Discovery Tool☆220Updated 3 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- ☆218Updated 9 months ago