Alternatives and similar repositories for nanocomp:

Users that are interested in nanocomp are comparing it to the libraries listed below

• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆142Updated this week
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆132Updated 3 weeks ago
• marbl / ModDotPlot
  ☆137Updated this week
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆176Updated 2 weeks ago
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆123Updated 5 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆145Updated 2 years ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated last year
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆105Updated 2 years ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆183Updated 8 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆194Updated last week
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆173Updated this week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆207Updated 3 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆96Updated last month
• EichlerLab / pav
  Phased assembly variant caller
  ☆110Updated 3 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 5 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 9 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆159Updated last year
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆227Updated last year
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆86Updated 7 months ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆140Updated 4 months ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆200Updated 6 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆102Updated 4 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆205Updated 2 years ago
• aaranyue / quarTeT
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆122Updated last month
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆138Updated 3 weeks ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆98Updated 2 weeks ago
• twolinin / longphase
  ☆109Updated 2 weeks ago