Comparison of multiple long read datasets
☆180Aug 3, 2026Updated 3 weeks ago
Alternatives and similar repositories for nanocomp
Users that are interested in nanocomp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An overview of all nanopack tools☆290Jun 2, 2023Updated 3 years ago
- Plotting scripts for long read sequencing data☆560Aug 18, 2026Updated 2 weeks ago
- Create statistic summary of an Oxford Nanopore read dataset☆137Nov 4, 2022Updated 3 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆189Aug 17, 2026Updated 2 weeks ago
- Quality control tools for nanopore sequencing data☆114Oct 26, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- quality filtering tool for long reads☆412Sep 17, 2025Updated 11 months ago
- Filtering and trimming of long read sequencing data☆219Jan 16, 2023Updated 3 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆186Jul 21, 2026Updated last month
- ☆259Aug 3, 2026Updated 3 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆243Dec 29, 2023Updated 2 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆170Mar 25, 2026Updated 5 months ago
- a long read simulator that can imitate many types of read problems☆298Jul 24, 2026Updated last month
- De novo construction of isoforms from long-read data☆39Updated this week
- Variant calling tool for long-read sequencing data☆118Mar 19, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 7 months ago
- ☆51Jan 23, 2026Updated 7 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 7 months ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆389Jul 9, 2026Updated last month
- Long read production pipelines☆151Aug 11, 2026Updated 3 weeks ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆524May 20, 2026Updated 3 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- Splitting of sequence reads by internal adapter sequence search☆51May 30, 2023Updated 3 years ago
- cDNA read preprocessing☆96Jul 25, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆87Aug 20, 2026Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆186Mar 25, 2026Updated 5 months ago
- Structural variation caller using third generation sequencing☆677Jul 20, 2026Updated last month
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆271Updated this week
- De novo clustering of long transcript reads into genes☆80Apr 27, 2025Updated last year
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- Fast and accurately polish the genome generated by long reads.☆246Jan 9, 2025Updated last year
- Pan-genome wide association studies☆223May 29, 2024Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆206Jun 10, 2026Updated 2 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆119Updated this week
- ☆116Updated this week
- Evaluating genome assemblies☆125Mar 3, 2026Updated 5 months ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated last month
- SV detection tool for nanopore sequence reads☆98Mar 25, 2026Updated 5 months ago