Alternatives and similar repositories for nanocomp

Users that are interested in nanocomp are comparing it to the libraries listed below

• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆142Updated last month
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆136Updated last month
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆116Updated 2 years ago
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆109Updated 9 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆120Updated this week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆155Updated last month
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆216Updated 3 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆185Updated 2 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆158Updated 3 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 4 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆103Updated 2 months ago
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆194Updated last month
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 2 months ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆215Updated 11 months ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆249Updated last year
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆121Updated 2 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆144Updated last year
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆142Updated 3 weeks ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• MaestSi / MetONTIIME
  A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
  ☆111Updated 4 months ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆90Updated last year
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆173Updated 4 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆114Updated 8 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆155Updated 2 years ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆111Updated 2 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆155Updated 5 months ago
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆154Updated 3 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆102Updated 10 months ago