Alternatives and similar repositories for nanocomp

Users that are interested in nanocomp are comparing it to the libraries listed below

• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆128Updated 7 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆156Updated 3 years ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆137Updated 3 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆213Updated last month
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆164Updated last year
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆117Updated 2 years ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆244Updated last year
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆151Updated 2 months ago
• wdecoster / chopper
  ☆194Updated last month
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆99Updated this week
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆204Updated 2 years ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆119Updated last week
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆225Updated 4 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆188Updated this week
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆150Updated 2 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆215Updated 5 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆182Updated 3 weeks ago
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆107Updated 7 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 2 weeks ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆185Updated last year
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆214Updated 9 months ago
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆188Updated 2 weeks ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 4 years ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆113Updated 2 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 2 years ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆141Updated 7 months ago
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆188Updated last week
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆151Updated last month
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆149Updated 3 months ago