Comparison of multiple long read datasets
☆160Dec 2, 2025Updated 3 months ago
Alternatives and similar repositories for nanocomp
Users that are interested in nanocomp are comparing it to the libraries listed below
Sorting:
- An overview of all nanopack tools☆283Jun 2, 2023Updated 2 years ago
- Create statistic summary of an Oxford Nanopore read dataset☆132Nov 4, 2022Updated 3 years ago
- Quality control tools for nanopore sequencing data☆111Oct 26, 2024Updated last year
- Plotting scripts for long read sequencing data☆534Dec 4, 2025Updated 2 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆160Jul 4, 2025Updated 7 months ago
- quality filtering tool for long reads☆394Sep 17, 2025Updated 5 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆172Feb 11, 2026Updated 2 weeks ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆119Jan 8, 2026Updated last month
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 8 months ago
- ☆234Feb 3, 2026Updated last month
- Tandem repeat expansion detection or genotyping from long-read alignments☆143Nov 24, 2025Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆238Dec 29, 2023Updated 2 years ago
- Filtering and trimming of long read sequencing data☆214Jan 16, 2023Updated 3 years ago
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated 11 months ago
- ☆44Jan 23, 2026Updated last month
- a long read simulator that can imitate many types of read problems☆267Jul 22, 2024Updated last year
- De novo clustering of long transcript reads into genes☆70Apr 27, 2025Updated 10 months ago
- Long read production pipelines☆151Feb 23, 2026Updated last week
- ☆83Jan 16, 2026Updated last month
- cDNA read preprocessing☆87Jul 25, 2024Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆146Jul 7, 2025Updated 7 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆175Apr 12, 2023Updated 2 years ago
- diploid SNV caller for error-prone reads☆206Apr 26, 2024Updated last year
- Fast and accurately polish the genome generated by long reads.☆240Jan 9, 2025Updated last year
- Pan-genome wide association studies☆208May 29, 2024Updated last year
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 4 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆180Dec 1, 2023Updated 2 years ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆186Feb 24, 2026Updated last week
- Structural variation caller using third generation sequencing☆636Dec 18, 2025Updated 2 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated last month
- Evaluating genome assemblies☆115Jan 11, 2026Updated last month
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆70Feb 20, 2026Updated last week
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Feb 11, 2026Updated 2 weeks ago
- A genome completeness evaluation tool based on miniprot☆235Sep 18, 2025Updated 5 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆65Oct 11, 2024Updated last year
- Small variant calling for haploid samples☆48Jan 5, 2026Updated last month
- SV detection tool for nanopore sequence reads☆97Jan 7, 2026Updated last month
- Sequence correction provided by ONT Research☆500Dec 8, 2025Updated 2 months ago