wdecoster / nanopackLinks
An overview of all nanopack tools
☆257Updated 2 years ago
Alternatives and similar repositories for nanopack
Users that are interested in nanopack are comparing it to the libraries listed below
Sorting:
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆280Updated 8 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆215Updated 2 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Filtering and trimming of long read sequencing data☆206Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆262Updated last month
- quality filtering tool for long reads☆343Updated last year
- Genome Assembly and Annotation Service code☆212Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆324Updated last year
- Fast and accurately polish the genome generated by long reads.☆226Updated 5 months ago
- ☆198Updated 2 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- A tool to circularize genome assemblies☆242Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆229Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆139Updated 3 years ago
- Toolset for SV simulation, comparison and filtering☆384Updated last year
- Nanopore demultiplexing, QC and alignment pipeline☆203Updated 3 weeks ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆257Updated 6 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆271Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆169Updated last year
- Synteny and Rearrangement Identifier☆387Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆150Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆308Updated 2 months ago
- A minimap2 frontend for PacBio native data formats☆197Updated 3 months ago
- ☆211Updated 5 months ago
- PASA software☆188Updated 4 months ago
- Fast genome analysis from unassembled short reads☆292Updated last year
- TransDecoder source☆291Updated 8 months ago
- Annotation and Ranking of Structural Variation☆260Updated 3 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆347Updated 3 weeks ago