wdecoster / nanopack
An overview of all nanopack tools
☆239Updated last year
Alternatives and similar repositories for nanopack:
Users that are interested in nanopack are comparing it to the libraries listed below
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 5 months ago
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- quality filtering tool for long reads☆326Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆210Updated this week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆268Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆220Updated 3 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆357Updated 3 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆248Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆318Updated 10 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆160Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆137Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆147Updated 2 years ago
- ☆183Updated 3 weeks ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Genome Assembly and Annotation Service code☆211Updated last year
- PASA software☆186Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆302Updated last week
- Genome browser and variant annotation☆300Updated last week
- A tool to circularize genome assemblies☆240Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆265Updated last year
- Nanopore demultiplexing, QC and alignment pipeline☆198Updated 2 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆278Updated 11 months ago
- De-Novo Repeat Discovery Tool☆208Updated 3 months ago
- Fast genome analysis from unassembled short reads☆285Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆265Updated last month
- Long read / genome alignment software☆283Updated 5 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆215Updated 9 months ago
- A minimap2 frontend for PacBio native data formats☆191Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆200Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆226Updated 4 years ago