schneebergerlab / syriLinks
Synteny and Rearrangement Identifier
☆413Updated 5 months ago
Alternatives and similar repositories for syri
Users that are interested in syri are comparing it to the libraries listed below
Sorting:
- quality filtering tool for long reads☆366Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆321Updated 6 months ago
- k-mer based assembly evaluation☆327Updated last year
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- Fast and accurate de novo assembler for long reads☆394Updated last year
- Eukaryotic Genome Annotation Pipeline☆365Updated 3 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆426Updated 8 months ago
- Fast genome analysis from unassembled short reads☆297Updated last year
- A tool to circularize genome assemblies☆247Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆333Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆364Updated last week
- the pangenome graph builder☆455Updated 2 months ago
- ☆263Updated 3 months ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Any Way to Show Multi genomic Synteny☆204Updated 3 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆369Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆534Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆270Updated last week
- ☆212Updated 2 weeks ago
- Scan contig files against PubMLST typing schemes☆247Updated 2 years ago
- adapter trimmer for Oxford Nanopore reads☆373Updated last year
- An overview of all nanopack tools☆270Updated 2 years ago
- haplotypic duplication identification tool☆259Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- An updated pipeline for pangenome investigation☆316Updated 7 months ago
- Extensive de-novo TE Annotator☆411Updated 3 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆210Updated 3 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆272Updated 3 weeks ago
- 3D de novo assembly (3D DNA) pipeline☆216Updated last year
- Bacterial ribosomal RNA predictor☆256Updated 2 years ago