Alternatives and similar repositories for Winnowmap

Users that are interested in Winnowmap are comparing it to the libraries listed below

• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆238Updated last year
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆309Updated last month
• wdecoster / chopper
  ☆216Updated last month
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated last year
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆220Updated last month
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆205Updated last month
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆208Updated 2 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆228Updated 10 months ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆209Updated 3 months ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆331Updated last year
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆365Updated last month
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆260Updated last year
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆160Updated 8 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆204Updated 2 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated last year
• jtlovell / GENESPACE
  ☆218Updated 9 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆173Updated last year
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆282Updated 8 months ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆219Updated last year
• KamilSJaron / smudgeplot
  Inference of ploidy and heterozygosity structure using whole genome sequencing data
  ☆281Updated last month
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆326Updated 6 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆234Updated 9 months ago
• GFA-spec / GFA-spec
  Graphical Fragment Assembly (GFA) Format Specification
  ☆215Updated last year
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆161Updated 3 years ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆305Updated last year
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆191Updated last month
• Benson-Genomics-Lab / TRF
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆195Updated 2 years ago
• lbcb-sci / herro
  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …
  ☆231Updated 2 weeks ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆177Updated 4 years ago
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆183Updated last month