marbl / WinnowmapLinks
Long read / genome alignment software
☆311Updated last year
Alternatives and similar repositories for Winnowmap
Users that are interested in Winnowmap are comparing it to the libraries listed below
Sorting:
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆242Updated last year
- Jasmine: SV Merging Across Samples☆232Updated 11 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆318Updated 2 months ago
- A minimap2 frontend for PacBio native data formats☆207Updated 3 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆159Updated 9 months ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- ☆220Updated this week
- A bioinformatics tool for working with modified bases☆233Updated last week
- Any Way to Show Multi genomic Synteny☆213Updated 5 months ago
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆374Updated this week
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- k-mer based assembly evaluation☆333Updated last year
- ☆222Updated 10 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- Long read based human genomic structural variation detection with cuteSV☆274Updated 2 months ago
- haplotypic duplication identification tool☆269Updated last month
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆283Updated this week
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 5 months ago
- Structural Variant Identification Method using Long Reads☆179Updated 4 years ago
- De-Novo Repeat Discovery Tool☆227Updated 4 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- Nanopore data assembler☆162Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆332Updated 8 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆235Updated 3 weeks ago
- Program for aligning DNA sequences, a pairwise aligner.☆232Updated 5 months ago
- a long read simulator that can imitate many types of read problems☆252Updated last year