Alternatives and similar repositories for NanoPlot:

Users that are interested in NanoPlot are comparing it to the libraries listed below

• rrwick / Filtlong
  quality filtering tool for long reads
  ☆327Updated last year
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆449Updated 6 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆357Updated 3 years ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆318Updated 10 months ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆356Updated 11 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆276Updated 6 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆501Updated last year
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆497Updated last month
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆584Updated 3 weeks ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆397Updated 2 months ago
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆305Updated last month
• TransDecoder / TransDecoder
  TransDecoder source
  ☆288Updated 6 months ago
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆507Updated 8 months ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆367Updated 7 months ago
• ablab / quast
  Genome assembly evaluation tool
  ☆427Updated 5 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆346Updated last month
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆419Updated last year
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆201Updated 2 years ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆334Updated last year
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆239Updated last year
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆266Updated 2 months ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆595Updated 8 months ago
• mummer4 / mummer
  Mummer alignment tool
  ☆496Updated 2 months ago
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆399Updated last year
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆211Updated last year
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆825Updated 7 months ago
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆356Updated last month
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆376Updated 2 weeks ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆332Updated last week
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆297Updated last year