Alternatives and similar repositories for NanoPlot:

Users that are interested in NanoPlot are comparing it to the libraries listed below

• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆575Updated this week
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆436Updated 4 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆315Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆347Updated 2 years ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆314Updated 8 months ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆348Updated 9 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆489Updated last year
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆377Updated 3 weeks ago
• ablab / quast
  Genome assembly evaluation tool
  ☆420Updated 3 months ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆478Updated this week
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆274Updated 3 months ago
• usadellab / Trimmomatic
  ☆230Updated 8 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆284Updated 4 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆218Updated 4 years ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆332Updated 3 weeks ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆581Updated 6 months ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆326Updated last year
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆412Updated last year
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆360Updated 5 months ago
• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆573Updated 2 weeks ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆304Updated last year
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆332Updated 2 years ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆260Updated last week
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆296Updated 10 months ago
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆301Updated 6 months ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆377Updated 9 months ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆211Updated 2 years ago
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆493Updated 6 months ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆198Updated 2 years ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆392Updated this week