Alternatives and similar repositories for NanoPlot:

Users that are interested in NanoPlot are comparing it to the libraries listed below

• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆352Updated 10 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆322Updated last year
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆440Updated 5 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆353Updated 2 years ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆316Updated 9 months ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆388Updated last month
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆582Updated last month
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆486Updated 2 weeks ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆380Updated 10 months ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆329Updated last year
• ablab / quast
  Genome assembly evaluation tool
  ☆423Updated 3 months ago
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆303Updated 2 weeks ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆236Updated last year
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆276Updated 4 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆221Updated 4 years ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆494Updated last year
• TransDecoder / TransDecoder
  TransDecoder source
  ☆285Updated 5 months ago
• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆584Updated last month
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆360Updated 6 months ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆201Updated 2 years ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆337Updated this week
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆266Updated last month
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆584Updated 7 months ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆218Updated 2 years ago
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆395Updated last year
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆813Updated 6 months ago
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆470Updated last year
• sanger-pathogens / snp-sites
  Finds SNP sites from a multi-FASTA alignment file
  ☆254Updated 4 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆299Updated 3 weeks ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆367Updated 2 weeks ago