Plotting scripts for long read sequencing data
☆564Oct 1, 2026Updated 3 weeks ago
Alternatives and similar repositories for NanoPlot
Users that are interested in NanoPlot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆528May 20, 2026Updated 5 months ago
- adapter trimmer for Oxford Nanopore reads☆389May 8, 2024Updated 2 years ago
- quality filtering tool for long reads☆421Sep 17, 2025Updated last year
- Comparison of multiple long read datasets☆182Aug 3, 2026Updated 2 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆954Apr 3, 2026Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated 2 years ago
- Create statistic summary of an Oxford Nanopore read dataset☆140Nov 4, 2022Updated 3 years ago
- Filtering and trimming of long read sequencing data☆219Jan 16, 2023Updated 3 years ago
- ☆262Oct 1, 2026Updated 3 weeks ago
- Structural variation caller using third generation sequencing☆685Oct 18, 2026Updated last week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,261May 19, 2026Updated 5 months ago
- Signal-level algorithms for MinION data☆601Aug 5, 2023Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Quality control for MinION sequencing data☆220Mar 17, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An overview of all nanopack tools☆293Jun 2, 2023Updated 3 years ago
- Oxford Nanopore's Basecaller☆883Sep 3, 2026Updated last month
- Quality control tools for nanopore sequencing data☆116Oct 26, 2024Updated 2 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆190Oct 1, 2026Updated 3 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆350Jul 24, 2026Updated 3 months ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆396Updated this week
- Long read based human genomic structural variation detection with cuteSV☆296Oct 12, 2026Updated 2 weeks ago
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- De novo genome assembler for long uncorrected reads☆238Nov 15, 2023Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆188Mar 25, 2026Updated 7 months ago
- A single molecule sequence assembler for genomes large and small.☆707Sep 10, 2026Updated last month
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Fast and accurate de novo assembler for long reads☆407May 10, 2024Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Long read / genome alignment software☆333Dec 16, 2025Updated 10 months ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- a long read simulator that can imitate many types of read problems☆308Jul 24, 2026Updated 3 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 4 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆818May 31, 2026Updated 4 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆243Sep 11, 2026Updated last month
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆878May 2, 2026Updated 5 months ago