Plotting scripts for long read sequencing data
☆532Dec 4, 2025Updated 2 months ago
Alternatives and similar repositories for NanoPlot
Users that are interested in NanoPlot are comparing it to the libraries listed below
Sorting:
- Sequence correction provided by ONT Research☆500Dec 8, 2025Updated 2 months ago
- quality filtering tool for long reads☆394Sep 17, 2025Updated 5 months ago
- adapter trimmer for Oxford Nanopore reads☆382May 8, 2024Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- Comparison of multiple long read datasets☆158Dec 2, 2025Updated 2 months ago
- Structural variation caller using third generation sequencing☆636Dec 18, 2025Updated 2 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆131Nov 4, 2022Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆296May 9, 2024Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆905May 2, 2025Updated 9 months ago
- Filtering and trimming of long read sequencing data☆214Jan 16, 2023Updated 3 years ago
- Quality control for MinION sequencing data☆217Jan 26, 2023Updated 3 years ago
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,128Feb 13, 2026Updated 2 weeks ago
- ☆234Feb 3, 2026Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆180Dec 1, 2023Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆236Dec 29, 2023Updated 2 years ago
- k-mer based assembly evaluation☆338Jun 28, 2024Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Mar 18, 2024Updated last year
- An overview of all nanopack tools☆283Jun 2, 2023Updated 2 years ago
- Long read based human genomic structural variation detection with cuteSV☆278Sep 30, 2025Updated 5 months ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Quality control tools for nanopore sequencing data☆111Oct 26, 2024Updated last year
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆337Updated this week
- Oxford Nanopore's Basecaller☆798Feb 19, 2026Updated last week
- Long read / genome alignment software☆310Dec 16, 2025Updated 2 months ago
- Fast and accurate de novo assembler for long reads☆398May 10, 2024Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆340Sep 11, 2025Updated 5 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated last month
- A single molecule sequence assembler for genomes large and small.☆695Updated this week
- a long read simulator that can imitate many types of read problems☆267Jul 22, 2024Updated last year
- Read-based phasing of genomic variants, also called haplotype assembly☆404Dec 31, 2025Updated 2 months ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆203May 4, 2023Updated 2 years ago
- De novo genome assembler for long uncorrected reads☆229Nov 15, 2023Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆240Jan 9, 2025Updated last year
- Nanopore sequence read simulator☆288Feb 3, 2026Updated 3 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆172Feb 11, 2026Updated 2 weeks ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆634Jul 25, 2024Updated last year
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 7 months ago