philres / ngmlrLinks
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
☆306Updated last year
Alternatives and similar repositories for ngmlr
Users that are interested in ngmlr are comparing it to the libraries listed below
Sorting:
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- An overview of all nanopack tools☆272Updated 2 years ago
- Structural variant toolkit for VCFs☆391Updated last week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆318Updated 2 months ago
- quality filtering tool for long reads☆380Updated 2 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆372Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆294Updated last year
- 3D de novo assembly (3D DNA) pipeline☆220Updated 2 years ago
- Toolset for SV simulation, comparison and filtering☆403Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆283Updated last week
- Filtering and trimming of long read sequencing data☆210Updated 2 years ago
- Long read / genome alignment software☆311Updated last year
- A minimap2 frontend for PacBio native data formats☆207Updated last month
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 5 months ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- adapter trimmer for Oxford Nanopore reads☆376Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆242Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆332Updated 8 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Synteny and Rearrangement Identifier☆430Updated 7 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Long read based human genomic structural variation detection with cuteSV☆276Updated 2 months ago
- ☆270Updated 5 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆281Updated 3 months ago
- Jasmine: SV Merging Across Samples☆232Updated 11 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 9 months ago
- ☆222Updated last week
- Classifier for metagenomic sequences☆267Updated 5 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆374Updated last week