philres / ngmlrLinks
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
☆307Updated last year
Alternatives and similar repositories for ngmlr
Users that are interested in ngmlr are comparing it to the libraries listed below
Sorting:
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆275Updated 6 months ago
- Structural variant toolkit for VCFs☆374Updated 3 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated 10 months ago
- quality filtering tool for long reads☆363Updated 2 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆298Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆269Updated last week
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆288Updated last year
- An overview of all nanopack tools☆267Updated 2 years ago
- De-Novo Repeat Discovery Tool☆216Updated last month
- PASA software☆193Updated 6 months ago
- 3D de novo assembly (3D DNA) pipeline☆216Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆208Updated 2 months ago
- Long read / genome alignment software☆297Updated 9 months ago
- Toolset for SV simulation, comparison and filtering☆395Updated last year
- Fast and accurately polish the genome generated by long reads.☆233Updated 7 months ago
- adapter trimmer for Oxford Nanopore reads☆369Updated last year
- Long read based human genomic structural variation detection with cuteSV☆271Updated 3 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆356Updated 2 weeks ago
- A minimap2 frontend for PacBio native data formats☆202Updated 6 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- TransDecoder source☆296Updated this week
- A tool to circularize genome assemblies☆247Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Synteny and Rearrangement Identifier☆403Updated 4 months ago
- Tool to plot synteny and structural rearrangements between genomes☆319Updated 4 months ago
- k-mer based assembly evaluation☆323Updated last year
- Extensive de-novo TE Annotator☆400Updated 2 months ago
- Read trimming tool for Illumina NGS data.☆142Updated 10 years ago