philres / ngmlrLinks
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
☆306Updated last year
Alternatives and similar repositories for ngmlr
Users that are interested in ngmlr are comparing it to the libraries listed below
Sorting:
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- An overview of all nanopack tools☆272Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆283Updated this week
- Structural variant toolkit for VCFs☆391Updated last week
- quality filtering tool for long reads☆380Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆294Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆318Updated 2 months ago
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆372Updated 3 years ago
- Toolset for SV simulation, comparison and filtering☆403Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- 3D de novo assembly (3D DNA) pipeline☆220Updated 2 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆374Updated this week
- adapter trimmer for Oxford Nanopore reads☆376Updated last year
- PASA software☆197Updated 9 months ago
- De-Novo Repeat Discovery Tool☆227Updated 4 months ago
- TransDecoder source☆299Updated 2 months ago
- Long read / genome alignment software☆311Updated last year
- ☆270Updated 5 months ago
- Synteny and Rearrangement Identifier☆428Updated 7 months ago
- Tool to plot synteny and structural rearrangements between genomes☆332Updated 8 months ago
- Quality control for MinION sequencing data☆217Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆285Updated this week
- A minimap2 frontend for PacBio native data formats☆207Updated 3 weeks ago
- k-mer based assembly evaluation☆333Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 5 months ago