HKU-BAL / Clair3Links
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
☆309Updated last month
Alternatives and similar repositories for Clair3
Users that are interested in Clair3 are comparing it to the libraries listed below
Sorting:
- A bioinformatics tool for working with modified bases☆220Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆282Updated 8 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated last year
- Long read / genome alignment software☆303Updated 11 months ago
- ☆216Updated last month
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆288Updated last year
- 3D de novo assembly (3D DNA) pipeline☆218Updated last year
- Structural variant toolkit for VCFs☆384Updated 3 weeks ago
- Jasmine: SV Merging Across Samples☆229Updated 10 months ago
- Methylation/modified base calling separated from basecalling.☆180Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆305Updated last year
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- ☆136Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆203Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆365Updated last month
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆231Updated 2 weeks ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- An overview of all nanopack tools☆271Updated 2 years ago
- k-mer based assembly evaluation☆331Updated last year
- Synteny and Rearrangement Identifier☆419Updated 6 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- A minimap2 frontend for PacBio native data formats☆205Updated last month
- quality filtering tool for long reads☆374Updated last month
- Any Way to Show Multi genomic Synteny☆209Updated 3 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆238Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆276Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆326Updated 6 months ago