Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
☆378Jun 25, 2026Updated 2 weeks ago
Alternatives and similar repositories for Clair3
Users that are interested in Clair3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variation caller using third generation sequencing☆670Jun 24, 2026Updated 2 weeks ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- Long read based human genomic structural variation detection with cuteSV☆290Updated this week
- ClairS - a deep-learning method for long-read somatic small variant calling☆110Jul 1, 2026Updated last week
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆107Sep 1, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Long read / genome alignment software☆328Dec 16, 2025Updated 6 months ago
- ☆129Updated this week
- Sequence correction provided by ONT Research☆516May 20, 2026Updated last month
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Variant calling tool for long-read sequencing data☆118Mar 19, 2025Updated last year
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 3 months ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- A tool for somatic structural variant calling using long reads☆174Jun 8, 2026Updated last month
- ☆254Jul 1, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- Structural variant toolkit for VCFs☆418May 22, 2026Updated last month
- Structural Variant Identification Method using Long Reads☆183Jun 29, 2021Updated 5 years ago
- Methylation/modified base calling separated from basecalling.☆188Sep 17, 2024Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆942Apr 3, 2026Updated 3 months ago
- Plotting scripts for long read sequencing data☆556Jun 15, 2026Updated 3 weeks ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆165Mar 19, 2026Updated 3 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆420Updated this week
- Jasmine: SV Merging Across Samples☆254Dec 20, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- A bioinformatics tool for working with modified bases☆269Jun 12, 2026Updated 3 weeks ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆402Apr 22, 2026Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆119Jun 1, 2026Updated last month
- ☆85Mar 3, 2025Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆186Apr 12, 2024Updated 2 years ago
- Oxford Nanopore's Basecaller☆846Jun 15, 2026Updated 3 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆241Dec 29, 2023Updated 2 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆163Mar 25, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆55Mar 5, 2025Updated last year
- ☆172Jan 22, 2026Updated 5 months ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆788May 31, 2026Updated last month