HKU-BAL / Clair3
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
☆265Updated last week
Alternatives and similar repositories for Clair3:
Users that are interested in Clair3 are comparing it to the libraries listed below
- Jasmine: SV Merging Across Samples☆207Updated 2 months ago
- A bioinformatics tool for working with modified bases☆174Updated this week
- Fast and accurately polish the genome generated by long reads.☆218Updated 2 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆266Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆143Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆297Updated 11 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆207Updated 2 weeks ago
- Structural variant toolkit for VCFs☆342Updated last week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆278Updated 10 months ago
- A minimap2 frontend for PacBio native data formats☆185Updated 2 weeks ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- ☆178Updated 3 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆197Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆247Updated 4 months ago
- Long read based human genomic structural variation detection with cuteSV☆254Updated 2 weeks ago
- ☆88Updated 2 months ago
- ☆112Updated last week
- ☆199Updated last month
- 3D de novo assembly (3D DNA) pipeline☆207Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆136Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆321Updated 2 weeks ago
- Any Way to Show Multi genomic Synteny☆176Updated 4 months ago
- Toolset for SV simulation, comparison and filtering☆373Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 4 months ago
- Tool to plot synteny and structural rearrangements between genomes☆299Updated 3 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 9 months ago
- Ultra-fast de novo assembler using long noisy reads☆132Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆159Updated last year
- An overview of all nanopack tools☆236Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago