Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
☆383Jul 9, 2026Updated 2 weeks ago
Alternatives and similar repositories for Clair3
Users that are interested in Clair3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variation caller using third generation sequencing☆673Jul 20, 2026Updated last week
- Long read based human genomic structural variation detection with cuteSV☆291Jul 12, 2026Updated 2 weeks ago
- ClairS: a deep-learning method for long-read tumor–normal pair somatic small variant calling☆112Jul 17, 2026Updated last week
- PEPPER-Margin-DeepVariant☆259Jan 12, 2024Updated 2 years ago
- Long read / genome alignment software☆329Dec 16, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Sequence correction provided by ONT Research☆518May 20, 2026Updated 2 months ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆107Sep 1, 2022Updated 3 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆43Apr 16, 2026Updated 3 months ago
- ☆129Jul 22, 2026Updated last week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆92Jul 1, 2026Updated 3 weeks ago
- ☆176Jul 20, 2026Updated last week
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Variant calling tool for long-read sequencing data☆118Mar 19, 2025Updated last year
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- ☆259Jul 1, 2026Updated 3 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆945Apr 3, 2026Updated 3 months ago
- Oxford Nanopore's Basecaller☆854Jul 22, 2026Updated last week
- Methylation/modified base calling separated from basecalling.☆188Sep 17, 2024Updated last year
- Tandem repeat expansion detection or genotyping from long-read alignments☆165Mar 25, 2026Updated 4 months ago
- Structural Variant Identification Method using Long Reads☆184Jun 29, 2021Updated 5 years ago
- Jasmine: SV Merging Across Samples☆260Dec 20, 2024Updated last year
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Mar 19, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SV detection tool for nanopore sequence reads☆98Mar 25, 2026Updated 4 months ago
- Plotting scripts for long read sequencing data☆557Jun 15, 2026Updated last month
- Structural variant toolkit for VCFs☆420May 22, 2026Updated 2 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆423Jul 4, 2026Updated 3 weeks ago
- A tool for somatic structural variant calling using long reads☆174Jun 8, 2026Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆404Apr 22, 2026Updated 3 months ago
- A bioinformatics tool for working with modified bases☆271Jul 14, 2026Updated 2 weeks ago
- Pipeline to convert a haploid assembly into diploid☆112Jan 23, 2025Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆241Dec 29, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Fast and accurate coordinate conversion between assemblies☆119Jun 1, 2026Updated last month
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆107Jun 25, 2026Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,221May 19, 2026Updated 2 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆232Sep 6, 2025Updated 10 months ago
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆792May 31, 2026Updated last month