Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
☆344Mar 26, 2026Updated this week
Alternatives and similar repositories for Clair3
Users that are interested in Clair3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variation caller using third generation sequencing☆641Mar 10, 2026Updated 2 weeks ago
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆106Mar 12, 2026Updated 2 weeks ago
- Long read based human genomic structural variation detection with cuteSV☆281Updated this week
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Sep 1, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆125Feb 22, 2026Updated last month
- Long read / genome alignment software☆312Dec 16, 2025Updated 3 months ago
- Sequence correction provided by ONT Research☆502Dec 8, 2025Updated 3 months ago
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated last year
- Long read aligner☆114May 26, 2023Updated 2 years ago
- diploid SNV caller for error-prone reads☆207Apr 26, 2024Updated last year
- SV detection tool for nanopore sequence reads☆97Updated this week
- ☆244Mar 2, 2026Updated 3 weeks ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for somatic structural variant calling using long reads☆166Mar 12, 2026Updated 2 weeks ago
- Methylation/modified base calling separated from basecalling.☆185Sep 17, 2024Updated last year
- Structural variant toolkit for VCFs☆401Mar 21, 2026Updated last week
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆910May 2, 2025Updated 10 months ago
- A bioinformatics tool for working with modified bases☆257Jan 19, 2026Updated 2 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆163Mar 19, 2026Updated last week
- Plotting scripts for long read sequencing data☆537Mar 17, 2026Updated last week
- Read-based phasing of genomic variants, also called haplotype assembly☆409Dec 31, 2025Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆308Mar 18, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆384Mar 11, 2026Updated 2 weeks ago
- Jasmine: SV Merging Across Samples☆244Dec 20, 2024Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆179Apr 12, 2024Updated last year
- Oxford Nanopore's Basecaller☆809Feb 19, 2026Updated last month
- Fast and accurate coordinate conversion between assemblies☆118Oct 9, 2025Updated 5 months ago
- ☆157Jan 22, 2026Updated 2 months ago
- ☆84Mar 3, 2025Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆286Dec 29, 2025Updated 3 months ago
- Toolset for SV simulation, comparison and filtering☆414Dec 1, 2023Updated 2 years ago
- Signal-level algorithms for MinION data☆595Aug 5, 2023Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆757Mar 18, 2025Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,144Feb 13, 2026Updated last month
- Tandem repeat expansion detection or genotyping from long-read alignments☆149Nov 24, 2025Updated 4 months ago