marbl / verkkoView external linksLinks
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
☆381Feb 6, 2026Updated last week
Alternatives and similar repositories for verkko
Users that are interested in verkko are comparing it to the libraries listed below
Sorting:
- k-mer based assembly evaluation☆338Jun 28, 2024Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆736Mar 18, 2025Updated 10 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆231Sep 6, 2024Updated last year
- Long read / genome alignment software☆311Dec 16, 2025Updated last month
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 3 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆239Feb 3, 2026Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆164Oct 29, 2025Updated 3 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated 2 weeks ago
- Evaluating genome assemblies☆114Jan 11, 2026Updated last month
- ☆119Oct 10, 2025Updated 4 months ago
- An accurate GFF3/GTF lift over pipeline☆526Aug 1, 2023Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆233Sep 18, 2025Updated 4 months ago
- Synteny and Rearrangement Identifier☆447Apr 29, 2025Updated 9 months ago
- Tool to plot synteny and structural rearrangements between genomes☆341Apr 7, 2025Updated 10 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆146Jul 7, 2025Updated 7 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆554Feb 14, 2024Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Dec 16, 2025Updated last month
- Sequence-to-graph mapper and graph generator☆470Aug 11, 2025Updated 6 months ago
- This is the standalone version of the EviAnn pipeline☆136Feb 5, 2026Updated last week
- Yet another Hi-C scaffolding tool☆170Nov 4, 2024Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆191May 11, 2025Updated 9 months ago
- Yet another k-mer analyzer☆158Dec 30, 2025Updated last month
- ☆284Dec 29, 2025Updated last month
- alignment to variation graph inducer☆157Jan 20, 2026Updated 3 weeks ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆234Updated this week
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆254Jan 5, 2026Updated last month
- the pangenome graph builder☆478Dec 8, 2025Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆291Jan 30, 2026Updated 2 weeks ago
- Identify and find telomeres, or telomeric repeats in a genome.☆158Nov 24, 2025Updated 2 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆652Updated this week
- Long read based human genomic structural variation detection with cuteSV☆278Sep 30, 2025Updated 4 months ago
- Constructing a pangenome gene graph☆204Aug 11, 2025Updated 6 months ago
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- Jasmine: SV Merging Across Samples☆240Dec 20, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- Align proteins to genomes with splicing and frameshift☆395Jan 5, 2026Updated last month
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- Fast and accurate de novo assembler for long reads☆398May 10, 2024Updated last year