fritzsedlazeck / SnifflesLinks
Structural variation caller using third generation sequencing
☆610Updated last month
Alternatives and similar repositories for Sniffles
Users that are interested in Sniffles are comparing it to the libraries listed below
Sorting:
- Sequence correction provided by ONT Research☆468Updated 2 months ago
- Plotting scripts for long read sequencing data☆490Updated last week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆663Updated 4 months ago
- Mummer alignment tool☆521Updated 6 months ago
- adapter trimmer for Oxford Nanopore reads☆368Updated last year
- An accurate GFF3/GTF lift over pipeline☆493Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆520Updated last year
- Official home of genome aligner based upon notion of Cactus graphs☆594Updated this week
- Structural variant toolkit for VCFs☆367Updated this week
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆305Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆857Updated 3 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆419Updated 6 months ago
- Genome assembly evaluation tool☆453Updated 8 months ago
- Toolset for SV simulation, comparison and filtering☆393Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆478Updated last week
- Fast and accurate de novo assembler for long reads☆390Updated last year
- the pangenome graph builder☆444Updated last week
- Sequence-to-graph mapper and graph generator☆451Updated last week
- TransDecoder source☆296Updated 10 months ago
- Data and analysis for NA12878 genome on nanopore☆393Updated 2 years ago
- ☆259Updated last week
- hybrid assembly pipeline for bacterial genomes☆605Updated last year
- A single molecule sequence assembler for genomes large and small.☆685Updated 3 weeks ago
- quality filtering tool for long reads☆358Updated last year
- Rapid haploid variant calling and core genome alignment☆534Updated last year
- Extensive de-novo TE Annotator☆397Updated last month
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆519Updated last week
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆331Updated 3 weeks ago