A tool for Racon polishing of miniasm assemblies
☆83Jul 24, 2026Updated last month
Alternatives and similar repositories for Minipolish
Users that are interested in Minipolish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆950Apr 3, 2026Updated 4 months ago
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A tool for removing redundant genomes from a set of assemblies☆85Jul 24, 2026Updated last month
- De novo genome assembler for long uncorrected reads☆233Nov 15, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆348Jul 24, 2026Updated last month
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- quality filtering tool for long reads☆412Sep 17, 2025Updated 11 months ago
- A single molecule sequence assembler for genomes large and small.☆708Jun 18, 2026Updated 2 months ago
- ✏️ Genome assembly polishing & SNV detection☆74Jun 12, 2026Updated 2 months ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆358Jul 19, 2025Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆243Dec 29, 2023Updated 2 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 7 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- ☆35Feb 20, 2020Updated 6 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆524May 20, 2026Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆651Jul 29, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆676Jul 7, 2026Updated last month
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Aug 30, 2022Updated 4 years ago
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- ☆278Jun 26, 2025Updated last year
- Long read / genome alignment software☆330Dec 16, 2025Updated 8 months ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 4 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆302May 9, 2024Updated 2 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆147Jan 19, 2026Updated 7 months ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago