ablab / quastLinks
Genome assembly evaluation tool
☆464Updated 10 months ago
Alternatives and similar repositories for quast
Users that are interested in quast are comparing it to the libraries listed below
Sorting:
- adapter trimmer for Oxford Nanopore reads☆371Updated last year
- Plotting scripts for long read sequencing data☆498Updated 2 weeks ago
- hybrid assembly pipeline for bacterial genomes☆612Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆384Updated 3 months ago
- Sequence correction provided by ONT Research☆480Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆528Updated last year
- Mummer alignment tool☆524Updated 7 months ago
- Rapid haploid variant calling and core genome alignment☆542Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆423Updated 7 months ago
- Eukaryotic Genome Annotation Pipeline☆362Updated 2 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆354Updated 2 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆441Updated 2 years ago
- quality filtering tool for long reads☆365Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆349Updated last month
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆434Updated last year
- Classifier for metagenomic sequences☆265Updated 2 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆384Updated this week
- 🌈 Interactive analysis of metagenomics data☆423Updated last month
- Fast Whole-Genome Similarity (ANI) Estimation☆427Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆549Updated 2 weeks ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆679Updated 5 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆868Updated 4 months ago
- A complete pipeline for metagenomic analysis☆427Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆332Updated last week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆319Updated 6 months ago
- Synteny and Rearrangement Identifier☆409Updated 4 months ago
- Fast and accurate de novo assembler for long reads☆395Updated last year