Genome assembly evaluation tool
☆498Nov 14, 2024Updated last year
Alternatives and similar repositories for quast
Users that are interested in quast are comparing it to the libraries listed below
Sorting:
- SPAdes Genome Assembler☆912Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆905May 2, 2025Updated 10 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,128Feb 13, 2026Updated 2 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆666Dec 3, 2022Updated 3 years ago
- Mummer alignment tool☆548Feb 4, 2025Updated last year
- Ultra-fast and memory-efficient (meta-)genome assembler☆696Oct 28, 2025Updated 4 months ago
- k-mer based assembly evaluation☆339Jun 28, 2024Updated last year
- A single molecule sequence assembler for genomes large and small.☆695Updated this week
- Pilon is an automated genome assembly improvement and variant detection tool☆377Apr 10, 2022Updated 3 years ago
- hybrid assembly pipeline for bacterial genomes☆634Jul 25, 2024Updated last year
- Fast genome analysis from unassembled short reads☆313Apr 8, 2024Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆558Feb 14, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆382Updated this week
- Rapid prokaryotic genome annotation☆957Jan 6, 2026Updated last month
- Sequence correction provided by ONT Research☆500Dec 8, 2025Updated 2 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆403Jun 12, 2025Updated 8 months ago
- Rapid large-scale prokaryote pan genome analysis☆371Nov 3, 2025Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆296May 9, 2024Updated last year
- Synteny and Rearrangement Identifier☆448Apr 29, 2025Updated 10 months ago
- Create a tree using Mash distances☆182Oct 24, 2023Updated 2 years ago
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated last year
- Rapid haploid variant calling and core genome alignment☆567Dec 12, 2025Updated 2 months ago
- Prodigal Gene Prediction Software☆525Jan 23, 2024Updated 2 years ago
- The second version of the Kraken taxonomic sequence classification system☆873Feb 19, 2026Updated last week
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- ☆271Jun 26, 2025Updated 8 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆173Apr 14, 2025Updated 10 months ago
- Accelerated BLAST compatible local sequence aligner.☆1,245Feb 23, 2026Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆449Oct 20, 2025Updated 4 months ago
- A fast multi-threaded k-mer counter☆529Mar 20, 2024Updated last year
- quality filtering tool for long reads☆394Sep 17, 2025Updated 5 months ago
- An updated pipeline for pangenome investigation☆345Jan 15, 2026Updated last month
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆352Jul 19, 2025Updated 7 months ago
- Read alignment statistics for metagenomics☆390Jan 16, 2026Updated last month
- adapter trimmer for Oxford Nanopore reads☆382May 8, 2024Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆743Mar 18, 2025Updated 11 months ago
- Assemble large genomes using short reads☆327Mar 27, 2025Updated 11 months ago
- Chromosome-level scaffolding using multiple references☆164Sep 8, 2024Updated last year
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,292Jan 22, 2026Updated last month