Genome assembly evaluation tool
☆509Nov 14, 2024Updated last year
Alternatives and similar repositories for quast
Users that are interested in quast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SPAdes Genome Assembler☆932Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆921Apr 3, 2026Updated 3 weeks ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,164Apr 25, 2026Updated last week
- Ultra-fast and memory-efficient (meta-)genome assembler☆710Oct 28, 2025Updated 6 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆669Dec 3, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A single molecule sequence assembler for genomes large and small.☆700Feb 24, 2026Updated 2 months ago
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- Mummer alignment tool☆558Feb 4, 2025Updated last year
- Rapid prokaryotic genome annotation☆976Jan 6, 2026Updated 3 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 4 years ago
- hybrid assembly pipeline for bacterial genomes☆639Jul 25, 2024Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- Fast genome analysis from unassembled short reads☆320Apr 8, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆389Apr 22, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 2 months ago
- Sequence correction provided by ONT Research☆507Apr 8, 2026Updated 3 weeks ago
- Rapid large-scale prokaryote pan genome analysis☆377Nov 3, 2025Updated 5 months ago
- quality filtering tool for long reads☆403Sep 17, 2025Updated 7 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- ☆273Jun 26, 2025Updated 10 months ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆530Sep 27, 2023Updated 2 years ago
- Prodigal Gene Prediction Software☆538Jan 23, 2024Updated 2 years ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The second version of the Kraken taxonomic sequence classification system☆895Apr 1, 2026Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆457Apr 12, 2026Updated 2 weeks ago
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated 3 weeks ago
- A fast multi-threaded k-mer counter☆538Mar 20, 2024Updated 2 years ago
- An updated pipeline for pangenome investigation☆356Apr 22, 2026Updated last week
- Rapid haploid variant calling and core genome alignment☆582Dec 12, 2025Updated 4 months ago
- Accelerated BLAST compatible local sequence aligner.☆1,287Apr 22, 2026Updated last week
- Synteny and Rearrangement Identifier☆462Mar 17, 2026Updated last month
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,341Apr 24, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assemble large genomes using short reads☆328Mar 27, 2026Updated last month
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆353Jul 19, 2025Updated 9 months ago
- adapter trimmer for Oxford Nanopore reads☆387May 8, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆633Feb 18, 2026Updated 2 months ago
- ☆248Apr 1, 2026Updated last month
- A tool to circularize genome assemblies☆255Apr 6, 2024Updated 2 years ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆469Mar 20, 2026Updated last month