Genome assembly evaluation tool
☆518Jun 10, 2026Updated last month
Alternatives and similar repositories for quast
Users that are interested in quast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SPAdes Genome Assembler☆953Jun 16, 2026Updated last month
- De novo assembler for single molecule sequencing reads using repeat graphs☆944Apr 3, 2026Updated 3 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,219May 19, 2026Updated 2 months ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆721Oct 28, 2025Updated 8 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆672Jul 7, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- k-mer based assembly evaluation☆349Jul 6, 2026Updated 2 weeks ago
- A single molecule sequence assembler for genomes large and small.☆702Jun 18, 2026Updated last month
- Rapid prokaryotic genome annotation☆992Jan 6, 2026Updated 6 months ago
- Mummer alignment tool☆565Feb 4, 2025Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆383Apr 10, 2022Updated 4 years ago
- hybrid assembly pipeline for bacterial genomes☆648Jul 7, 2026Updated 2 weeks ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆569Feb 14, 2024Updated 2 years ago
- Fast genome analysis from unassembled short reads☆324Apr 8, 2024Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆402Apr 22, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 4 months ago
- Sequence correction provided by ONT Research☆518May 20, 2026Updated 2 months ago
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 8 months ago
- quality filtering tool for long reads☆406Sep 17, 2025Updated 10 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆299May 9, 2024Updated 2 years ago
- The second version of the Kraken taxonomic sequence classification system☆926Jul 9, 2026Updated last week
- ☆278Jun 26, 2025Updated last year
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Prodigal Gene Prediction Software☆550Jan 23, 2024Updated 2 years ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Rapid haploid variant calling and core genome alignment☆594Dec 12, 2025Updated 7 months ago
- Read alignment statistics for metagenomics☆400Jul 10, 2026Updated last week
- A fast multi-threaded k-mer counter☆547Mar 20, 2024Updated 2 years ago
- An updated pipeline for pangenome investigation☆365Jul 2, 2026Updated 2 weeks ago
- Accelerated BLAST compatible local sequence aligner.☆1,312Jul 13, 2026Updated last week
- Synteny and Rearrangement Identifier☆480Jul 1, 2026Updated 3 weeks ago
- Assemble large genomes using short reads☆331Apr 30, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,400Jul 10, 2026Updated last week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆241Dec 29, 2023Updated 2 years ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆475Jul 15, 2026Updated last week
- adapter trimmer for Oxford Nanopore reads☆385May 8, 2024Updated 2 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆356Jul 19, 2025Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆663Jul 10, 2026Updated last week
- ☆258Jul 1, 2026Updated 2 weeks ago