ablab / quastLinks
Genome assembly evaluation tool
☆439Updated 6 months ago
Alternatives and similar repositories for quast
Users that are interested in quast are comparing it to the libraries listed below
Sorting:
- Tools for fast and flexible genome assembly scaffolding and improvement☆508Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆370Updated 9 months ago
- Structural variation caller using third generation sequencing☆593Updated last month
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆626Updated 2 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆363Updated 3 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆514Updated 2 months ago
- Rapid large-scale prokaryote pan genome analysis☆346Updated 3 years ago
- Sequence correction provided by ONT Research☆458Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆409Updated 4 months ago
- Eukaryotic Genome Annotation Pipeline☆351Updated last week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆340Updated last year
- adapter trimmer for Oxford Nanopore reads☆361Updated last year
- hybrid assembly pipeline for bacterial genomes☆599Updated 10 months ago
- Plotting scripts for long read sequencing data☆476Updated 3 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆832Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆230Updated 4 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆419Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆321Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆424Updated last year
- NCBI Prokaryotic Genome Annotation Pipeline☆338Updated this week
- Classifier for metagenomic sequences☆260Updated 7 months ago
- A complete pipeline for metagenomic analysis☆416Updated this week
- TransDecoder source☆289Updated 8 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆308Updated 3 months ago
- Scan contig files against PubMLST typing schemes☆226Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆387Updated last year
- Fast genome-wide functional annotation through orthology assignment☆622Updated last year
- Rapid comparison and dereplication of genomes☆294Updated last month
- Rapid haploid variant calling and core genome alignment☆518Updated 10 months ago
- A tool to circularize genome assemblies☆242Updated last year