a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
☆675Jul 7, 2026Updated last month
Alternatives and similar repositories for Bandage
Users that are interested in Bandage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- hybrid assembly pipeline for bacterial genomes☆651Jul 29, 2026Updated last month
- De novo assembler for single molecule sequencing reads using repeat graphs☆950Apr 3, 2026Updated 4 months ago
- Graphical Fragment Assembly (GFA) Format Specification☆222Aug 21, 2024Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆389Apr 10, 2022Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,242May 19, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A single molecule sequence assembler for genomes large and small.☆708Jun 18, 2026Updated 2 months ago
- Genome assembly evaluation tool☆519Jun 10, 2026Updated 2 months ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆358Jul 19, 2025Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆174Aug 19, 2026Updated last week
- adapter trimmer for Oxford Nanopore reads☆387May 8, 2024Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆302May 9, 2024Updated 2 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆523May 20, 2026Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆348Jul 24, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a short-read polishing tool for long-read assemblies☆224Jul 28, 2026Updated last month
- Mummer alignment tool☆573Feb 4, 2025Updated last year
- quality filtering tool for long reads☆413Sep 17, 2025Updated 11 months ago
- Rapid haploid variant calling and core genome alignment☆591Dec 12, 2025Updated 8 months ago
- Sequence-to-graph mapper and graph generator☆487Aug 11, 2025Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆242Dec 29, 2023Updated 2 years ago
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆289Oct 11, 2024Updated last year
- Ultra-fast and memory-efficient (meta-)genome assembler☆722Oct 28, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆278Jun 26, 2025Updated last year
- SPAdes Genome Assembler☆956Jun 16, 2026Updated 2 months ago
- ☆290Dec 29, 2025Updated 8 months ago
- Fast genome and metagenome distance estimation using MinHash☆451Sep 19, 2025Updated 11 months ago
- De novo genome assembler for long uncorrected reads☆233Nov 15, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆670Aug 7, 2026Updated 3 weeks ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆479Dec 16, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆808May 31, 2026Updated 3 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,423Jul 30, 2026Updated last month
- Long read / genome alignment software☆330Dec 16, 2025Updated 8 months ago
- Rapid prokaryotic genome annotation☆993Jan 6, 2026Updated 7 months ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆226Aug 11, 2026Updated 2 weeks ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 8 months ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 7 years ago