a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
☆672Jul 7, 2026Updated 2 weeks ago
Alternatives and similar repositories for Bandage
Users that are interested in Bandage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- hybrid assembly pipeline for bacterial genomes☆648Jul 7, 2026Updated 2 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆944Apr 3, 2026Updated 3 months ago
- Graphical Fragment Assembly (GFA) Format Specification☆220Aug 21, 2024Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,219May 19, 2026Updated 2 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆383Apr 10, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A single molecule sequence assembler for genomes large and small.☆702Jun 18, 2026Updated last month
- Genome assembly evaluation tool☆518Jun 10, 2026Updated last month
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆356Jul 19, 2025Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆173Jul 1, 2026Updated 2 weeks ago
- adapter trimmer for Oxford Nanopore reads☆385May 8, 2024Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆299May 9, 2024Updated 2 years ago
- Sequence correction provided by ONT Research☆517May 20, 2026Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆345Sep 11, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a short-read polishing tool for long-read assemblies☆218Sep 19, 2025Updated 10 months ago
- Mummer alignment tool☆564Feb 4, 2025Updated last year
- quality filtering tool for long reads☆406Sep 17, 2025Updated 10 months ago
- Rapid haploid variant calling and core genome alignment☆594Dec 12, 2025Updated 7 months ago
- Sequence-to-graph mapper and graph generator☆483Aug 11, 2025Updated 11 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆241Dec 29, 2023Updated 2 years ago
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Ultra-fast and memory-efficient (meta-)genome assembler☆721Oct 28, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆278Jun 26, 2025Updated last year
- SPAdes Genome Assembler☆952Jun 16, 2026Updated last month
- ☆289Dec 29, 2025Updated 6 months ago
- Fast genome and metagenome distance estimation using MinHash☆447Sep 19, 2025Updated 10 months ago
- De novo genome assembler for long uncorrected reads☆232Nov 15, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆663Jul 10, 2026Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆569Feb 14, 2024Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆790May 31, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast Whole-Genome Similarity (ANI) Estimation☆470Dec 16, 2025Updated 7 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,400Jul 10, 2026Updated last week
- Long read / genome alignment software☆328Dec 16, 2025Updated 7 months ago
- Rapid prokaryotic genome annotation☆992Jan 6, 2026Updated 6 months ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆225Jul 10, 2026Updated last week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 7 months ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago