Alternatives and similar repositories for Bandage:

Users that are interested in Bandage are comparing it to the libraries listed below

• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆826Updated last week
• ablab / quast
  Genome assembly evaluation tool
  ☆433Updated 5 months ago
• mummer4 / mummer
  Mummer alignment tool
  ☆501Updated 3 months ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆596Updated 9 months ago
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆675Updated this week
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆473Updated 3 months ago
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆452Updated 7 months ago
• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆616Updated last month
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆371Updated 8 months ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆506Updated last month
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆362Updated 3 years ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆506Updated last year
• ComparativeGenomicsToolkit / cactus
  Official home of genome aligner based upon notion of Cactus graphs
  ☆572Updated this week
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆410Updated last year
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆400Updated 3 months ago
• iqtree / iqtree2
  IQ-TREE software version 2: phylogenetics by maximum likelihood
  ☆283Updated last week
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆591Updated 3 weeks ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆337Updated this week
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆406Updated last week
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆360Updated last year
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆346Updated 2 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆288Updated 7 months ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆419Updated last year
• usadellab / Trimmomatic
  ☆243Updated 11 months ago
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆344Updated 3 years ago
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆380Updated last year
• fbreitwieser / pavian
  🌈 Interactive analysis of metagenomics data
  ☆416Updated 7 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆616Updated 11 months ago
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆308Updated 2 months ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆387Updated last year