A single molecule sequence assembler for genomes large and small.
☆708Jun 18, 2026Updated 2 months ago
Alternatives and similar repositories for canu
Users that are interested in canu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo assembler for single molecule sequencing reads using repeat graphs☆950Apr 3, 2026Updated 4 months ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆358Jul 19, 2025Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,242May 19, 2026Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆302May 9, 2024Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆389Apr 10, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- Signal-level algorithms for MinION data☆600Aug 5, 2023Updated 3 years ago
- hybrid assembly pipeline for bacterial genomes☆651Jul 29, 2026Updated last month
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Mummer alignment tool☆573Feb 4, 2025Updated last year
- Ultra-fast de novo assembler using long noisy reads☆137Feb 24, 2021Updated 5 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆808May 31, 2026Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆242Dec 29, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆278Jun 26, 2025Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆675Jul 7, 2026Updated last month
- Fast and accurate de novo assembler for long reads☆406May 10, 2024Updated 2 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆523May 20, 2026Updated 3 months ago
- Structural variation caller using third generation sequencing☆676Jul 20, 2026Updated last month
- Genome assembly evaluation tool☆519Jun 10, 2026Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆246Jan 9, 2025Updated last year
- k-mer based assembly evaluation☆354Jul 6, 2026Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- adapter trimmer for Oxford Nanopore reads☆387May 8, 2024Updated 2 years ago
- Fast genome analysis from unassembled short reads☆325Apr 8, 2024Updated 2 years ago
- Nanopore data assembler☆170Mar 27, 2022Updated 4 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆98Jun 27, 2022Updated 4 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- A tool for Racon polishing of miniasm assemblies☆83Jul 24, 2026Updated last month
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Jul 30, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- quality filtering tool for long reads☆413Sep 17, 2025Updated 11 months ago
- Plotting scripts for long read sequencing data☆560Aug 18, 2026Updated last week
- Sequence-to-graph mapper and graph generator☆487Aug 11, 2025Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- Fast genome and metagenome distance estimation using MinHash☆451Sep 19, 2025Updated 11 months ago
- Filtering and trimming of long read sequencing data☆219Jan 16, 2023Updated 3 years ago
- a toolkit for working with Oxford nanopore data☆242Feb 6, 2023Updated 3 years ago