marbl / canuLinks
A single molecule sequence assembler for genomes large and small.
☆680Updated last month
Alternatives and similar repositories for canu
Users that are interested in canu are comparing it to the libraries listed below
Sorting:
- De novo assembler for single molecule sequencing reads using repeat graphs☆843Updated last month
- hybrid assembly pipeline for bacterial genomes☆601Updated 11 months ago
- Structural variation caller using third generation sequencing☆596Updated 2 weeks ago
- Sequence correction provided by ONT Research☆462Updated last month
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆643Updated 3 months ago
- Plotting scripts for long read sequencing data☆482Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Mummer alignment tool☆515Updated 4 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆511Updated last year
- Genome assembly evaluation tool☆441Updated 7 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆411Updated 5 months ago
- Transcript assembly and quantification for RNA-Seq☆445Updated last week
- Official home of genome aligner based upon notion of Cactus graphs☆580Updated last week
- ☆253Updated last year
- An accurate GFF3/GTF lift over pipeline☆486Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆419Updated 5 months ago
- The next version of bwa-mem☆762Updated 10 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆527Updated 3 months ago
- adapter trimmer for Oxford Nanopore reads☆365Updated last year
- quality filtering tool for long reads☆343Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆234Updated 4 years ago
- Eukaryotic Genome Annotation Pipeline☆355Updated 3 weeks ago
- Fast and accurate de novo assembler for long reads☆388Updated last year
- Rapid haploid variant calling and core genome alignment☆524Updated 11 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆502Updated 7 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆509Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆619Updated 2 years ago
- TransDecoder source☆291Updated 8 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆324Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆471Updated last month