malonge / RagTagLinks
Tools for fast and flexible genome assembly scaffolding and improvement
☆534Updated last year
Alternatives and similar repositories for RagTag
Users that are interested in RagTag are comparing it to the libraries listed below
Sorting:
- adapter trimmer for Oxford Nanopore reads☆374Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆428Updated last week
- Plotting scripts for long read sequencing data☆505Updated 2 months ago
- Sequence correction provided by ONT Research☆482Updated 2 months ago
- Genome assembly evaluation tool☆468Updated 11 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆354Updated 2 months ago
- Synteny and Rearrangement Identifier☆416Updated 6 months ago
- Fast and accurate de novo assembler for long reads☆394Updated last year
- quality filtering tool for long reads☆373Updated last month
- An accurate GFF3/GTF lift over pipeline☆509Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline☆366Updated 3 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆369Updated 3 years ago
- General tools for genomic analyses.☆375Updated 8 months ago
- Structural variation caller using third generation sequencing☆622Updated last week
- Mummer alignment tool☆529Updated 8 months ago
- Extensive de-novo TE Annotator☆412Updated 2 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆689Updated 7 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆365Updated last month
- TransDecoder source☆298Updated last month
- the pangenome graph builder☆458Updated 2 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆242Updated 4 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆392Updated 4 months ago
- hybrid assembly pipeline for bacterial genomes☆623Updated last year
- Rapid haploid variant calling and core genome alignment☆547Updated last year
- Official home of genome aligner based upon notion of Cactus graphs☆618Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆333Updated last month
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆392Updated last month
- NCBI Prokaryotic Genome Annotation Pipeline☆358Updated 2 weeks ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆351Updated 8 months ago
- A complete pipeline for metagenomic analysis☆435Updated last month