alekseyzimin / masurcaLinks
☆270Updated 6 months ago
Alternatives and similar repositories for masurca
Users that are interested in masurca are comparing it to the libraries listed below
Sorting:
- Synteny and Rearrangement Identifier☆435Updated 8 months ago
- A tool to circularize genome assemblies☆249Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆335Updated 8 months ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- Filtering and trimming of long read sequencing data☆210Updated 2 years ago
- k-mer based assembly evaluation☆334Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 3 months ago
- quality filtering tool for long reads☆381Updated 3 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆247Updated 2 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆373Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆375Updated 2 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Bacterial ribosomal RNA predictor☆266Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆293Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Classifier for metagenomic sequences☆269Updated 6 months ago
- ☆223Updated 3 weeks ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216Updated 6 months ago
- Rapid comparison and dereplication of genomes☆324Updated last month
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆289Updated 3 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆331Updated 10 months ago
- ☆228Updated 11 months ago
- Scan contig files against PubMLST typing schemes☆259Updated this week
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆193Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated 2 weeks ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆272Updated 2 months ago
- Fast and accurate de novo assembler for long reads☆397Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- An updated pipeline for pangenome investigation☆334Updated 9 months ago