Alternatives and similar repositories for masurca

Users that are interested in masurca are comparing it to the libraries listed below

• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆331Updated last year
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆319Updated 4 months ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆403Updated 4 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆233Updated 7 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆363Updated 2 weeks ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆247Updated last year
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆208Updated 2 years ago
• wdecoster / chopper
  ☆209Updated 3 weeks ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆323Updated last year
• KamilSJaron / smudgeplot
  Inference of ploidy and heterozygosity structure using whole genome sequencing data
  ☆276Updated last month
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆288Updated last year
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated 10 months ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆204Updated last year
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆242Updated 2 years ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆368Updated 3 years ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆252Updated last year
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆216Updated last month
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆206Updated 2 years ago
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆295Updated last year
• sanger-pathogens / snp-sites
  Finds SNP sites from a multi-FASTA alignment file
  ☆266Updated 4 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆209Updated last year
• jtlovell / GENESPACE
  ☆216Updated 7 months ago
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆233Updated 2 years ago
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆319Updated 6 months ago
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆310Updated 5 months ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆208Updated 2 months ago
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆356Updated 2 weeks ago
• DaehwanKimLab / centrifuge
  Classifier for metagenomic sequences
  ☆265Updated 2 months ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆193Updated last month
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆201Updated last month