Alternatives and similar repositories for masurca

Users that are interested in masurca are comparing it to the libraries listed below

• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆322Updated last year
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆306Updated 2 months ago
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆280Updated last year
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆188Updated last year
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆225Updated 5 months ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆387Updated last month
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆339Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆363Updated 3 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆202Updated last year
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆214Updated last month
• wdecoster / chopper
  ☆194Updated last month
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆205Updated 2 years ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆190Updated last month
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆204Updated 2 months ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆242Updated last year
• KamilSJaron / smudgeplot
  Inference of ploidy and heterozygosity structure using whole genome sequencing data
  ☆269Updated 2 weeks ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆270Updated 4 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆254Updated 2 years ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆204Updated 2 years ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆230Updated 2 years ago
• jtlovell / GENESPACE
  ☆209Updated 4 months ago
• nf-core / mag
  Assembly and binning of metagenomes
  ☆238Updated this week
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆342Updated this week
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆156Updated 3 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆214Updated last month
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆278Updated 7 months ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆202Updated 9 months ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆282Updated 2 weeks ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 4 years ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆245Updated last year