Alternatives and similar repositories for masurca:

Users that are interested in masurca are comparing it to the libraries listed below

• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆319Updated 10 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆222Updated 3 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆302Updated 2 weeks ago
• wdecoster / chopper
  ☆185Updated 3 weeks ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆376Updated this week
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆278Updated 11 months ago
• jtlovell / GENESPACE
  ☆204Updated 2 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆327Updated last year
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆199Updated 8 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆357Updated 3 years ago
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆276Updated last week
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆201Updated 2 years ago
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆222Updated 2 years ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆239Updated last year
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆388Updated 11 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆200Updated last year
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆240Updated last year
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆209Updated last year
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆170Updated 4 years ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆276Updated 6 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆266Updated 2 months ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆298Updated last year
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆295Updated last month
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆501Updated last year
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆288Updated last year
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆345Updated last month
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆211Updated last year
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆356Updated 11 months ago
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆330Updated 2 weeks ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆180Updated 2 weeks ago