Alternatives and similar repositories for masurca

Users that are interested in masurca are comparing it to the libraries listed below

• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆425Updated 6 months ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆208Updated 2 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆329Updated 7 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated last year
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆374Updated 2 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆334Updated 2 months ago
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆291Updated last year
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆259Updated 2 years ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆234Updated 10 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆272Updated 2 years ago
• sanger-pathogens / snp-sites
  Finds SNP sites from a multi-FASTA alignment file
  ☆268Updated 4 years ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆371Updated 3 years ago
• DaehwanKimLab / centrifuge
  Classifier for metagenomic sequences
  ☆267Updated 5 months ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆332Updated last year
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆248Updated last year
• wdecoster / chopper
  ☆219Updated 2 weeks ago
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆240Updated 2 years ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆214Updated 4 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆282Updated 2 weeks ago
• KamilSJaron / smudgeplot
  Inference of ploidy and heterozygosity structure using whole genome sequencing data
  ☆281Updated this week
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated last year
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆367Updated last month
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆193Updated last year
• jtlovell / GENESPACE
  ☆222Updated 9 months ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆305Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆223Updated 3 months ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆357Updated 3 months ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆396Updated last year
• roblanf / minion_qc
  Quality control for MinION sequencing data
  ☆217Updated 2 years ago