Alternatives and similar repositories for hifiasm

Users that are interested in hifiasm are comparing it to the libraries listed below

• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆543Updated last year
• ComparativeGenomicsToolkit / cactus
  Official home of genome aligner based upon notion of Cactus graphs
  ☆633Updated this week
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆439Updated last month
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆883Updated 7 months ago
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆517Updated last week
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆488Updated this week
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆626Updated last month
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆628Updated last year
• ablab / quast
  Genome assembly evaluation tool
  ☆485Updated last year
• mummer4 / mummer
  Mummer alignment tool
  ☆540Updated 10 months ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆397Updated last year
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆515Updated 2 years ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆376Updated last year
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆695Updated last month
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆430Updated 7 months ago
• pangenome / pggb
  the pangenome graph builder
  ☆468Updated this week
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆570Updated this week
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆372Updated 3 years ago
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆555Updated last year
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆444Updated 4 months ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆451Updated 2 years ago
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆545Updated last week
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆369Updated 5 months ago
• oushujun / EDTA
  Extensive de-novo TE Annotator
  ☆421Updated 2 months ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆878Updated this week
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆380Updated 2 months ago
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆380Updated 9 months ago
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆460Updated last week
• TransDecoder / TransDecoder
  TransDecoder source
  ☆299Updated 2 months ago
• usadellab / Trimmomatic
  ☆279Updated last month