Alternatives and similar repositories for hifiasm:

Users that are interested in hifiasm are comparing it to the libraries listed below

• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆382Updated 10 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆498Updated last year
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆583Updated 2 weeks ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆392Updated 2 months ago
• ComparativeGenomicsToolkit / cactus
  Official home of genome aligner based upon notion of Cactus graphs
  ☆561Updated this week
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆443Updated 5 months ago
• ablab / quast
  Genome assembly evaluation tool
  ☆422Updated 4 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆355Updated 2 years ago
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆817Updated 6 months ago
• oushujun / EDTA
  Extensive de-novo TE Annotator
  ☆371Updated 3 weeks ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆353Updated 10 months ago
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆474Updated last year
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆465Updated last month
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆540Updated 8 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆286Updated 5 months ago
• pangenome / pggb
  the pangenome graph builder
  ☆420Updated last month
• mummer4 / mummer
  Mummer alignment tool
  ☆491Updated last month
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆371Updated last month
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆494Updated last week
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆267Updated last month
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆587Updated 8 months ago
• usadellab / Trimmomatic
  ☆239Updated 9 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆597Updated 10 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆324Updated last year
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆339Updated 3 weeks ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆276Updated 5 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆317Updated 9 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆221Updated 4 years ago
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆423Updated last week
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆252Updated 3 months ago