chhylp123 / hifiasmLinks
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
☆643Updated 3 months ago
Alternatives and similar repositories for hifiasm
Users that are interested in hifiasm are comparing it to the libraries listed below
Sorting:
- Structural variation caller using third generation sequencing☆596Updated 2 weeks ago
- Sequence correction provided by ONT Research☆462Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆411Updated 5 months ago
- Plotting scripts for long read sequencing data☆482Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆511Updated last year
- Official home of genome aligner based upon notion of Cactus graphs☆580Updated last week
- Fast and accurate de novo assembler for long reads☆388Updated last year
- An accurate GFF3/GTF lift over pipeline☆486Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆843Updated last month
- adapter trimmer for Oxford Nanopore reads☆365Updated last year
- Genome assembly evaluation tool☆441Updated 7 months ago
- Eukaryotic Genome Annotation Pipeline☆355Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- hybrid assembly pipeline for bacterial genomes☆601Updated 11 months ago
- TransDecoder source☆291Updated 8 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆527Updated 3 months ago
- the pangenome graph builder☆436Updated last week
- ☆253Updated last year
- Synteny and Rearrangement Identifier☆387Updated last month
- Mummer alignment tool☆515Updated 4 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆509Updated this week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆262Updated last month
- quality filtering tool for long reads☆343Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 11 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆324Updated last year
- Extensive de-novo TE Annotator☆390Updated 2 weeks ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆257Updated 6 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆303Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆234Updated 4 years ago