Alternatives and similar repositories for mummer

Users that are interested in mummer are comparing it to the libraries listed below

• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆422Updated 7 months ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆369Updated last year
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆495Updated last week
• ablab / quast
  Genome assembly evaluation tool
  ☆458Updated 9 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆527Updated last year
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆474Updated last week
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆351Updated last month
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆361Updated last month
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆392Updated last year
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆438Updated 2 years ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆368Updated 3 years ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆350Updated 3 weeks ago
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆426Updated last month
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆363Updated last week
• pangenome / pggb
  the pangenome graph builder
  ☆444Updated 3 weeks ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆608Updated last year
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆403Updated 3 months ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆381Updated 2 months ago
• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆671Updated 5 months ago
• usadellab / Trimmomatic
  ☆263Updated last week
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆380Updated 3 weeks ago
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆862Updated 3 months ago
• fritzsedlazeck / Sniffles
  Structural variation caller using third generation sequencing
  ☆612Updated this week
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆239Updated 4 years ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆544Updated last month
• oushujun / EDTA
  Extensive de-novo TE Annotator
  ☆400Updated 2 months ago
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆498Updated 2 years ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆296Updated 10 months ago
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆434Updated last year
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆424Updated last week