Mummer alignment tool
☆564Feb 4, 2025Updated last year
Alternatives and similar repositories for mummer
Users that are interested in mummer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Program for aligning DNA sequences, a pairwise aligner.☆250May 20, 2026Updated 2 months ago
- Synteny and Rearrangement Identifier☆480Jul 1, 2026Updated 2 weeks ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,219May 19, 2026Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- Phylogenetic orthology inference for comparative genomics☆865Jul 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- k-mer based assembly evaluation☆349Jul 6, 2026Updated 2 weeks ago
- A single molecule sequence assembler for genomes large and small.☆702Jun 18, 2026Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆569Feb 14, 2024Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆299May 9, 2024Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆383Apr 10, 2022Updated 4 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆924Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆944Apr 3, 2026Updated 3 months ago
- Fast genome analysis from unassembled short reads☆323Apr 8, 2024Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆648Jul 7, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A fast multi-threaded k-mer counter☆547Mar 20, 2024Updated 2 years ago
- haplotypic duplication identification tool☆291Oct 30, 2025Updated 8 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆241Dec 29, 2023Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆402Apr 22, 2026Updated 2 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆790May 31, 2026Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- Fast and accurate de novo assembler for long reads☆405May 10, 2024Updated 2 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Genome annotation with AUGUSTUS☆336May 30, 2026Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆672Jul 7, 2026Updated 2 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆349Apr 7, 2025Updated last year
- Genome assembly evaluation tool☆518Jun 10, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆547Aug 1, 2023Updated 2 years ago
- Sequence-to-graph mapper and graph generator☆483Aug 11, 2025Updated 11 months ago
- Fast genome-wide functional annotation through orthology assignment☆754May 22, 2026Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆696Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆217Jun 30, 2026Updated 2 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆297May 28, 2026Updated last month
- ☆278Jun 26, 2025Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆470Dec 16, 2025Updated 7 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 7 months ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆356Jul 19, 2025Updated last year