mummer4 / mummer
Mummer alignment tool
☆487Updated last month
Alternatives and similar repositories for mummer:
Users that are interested in mummer are comparing it to the libraries listed below
- Fast and accurate de novo assembler for long reads☆382Updated 10 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆390Updated last month
- Fast Whole-Genome Similarity (ANI) Estimation☆397Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆267Updated last month
- quality filtering tool for long reads☆323Updated last year
- adapter trimmer for Oxford Nanopore reads☆353Updated 10 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆354Updated 2 years ago
- Plotting scripts for long read sequencing data☆463Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆495Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆303Updated 3 weeks ago
- Sequence correction provided by ONT Research☆442Updated 5 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆362Updated 6 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆814Updated 6 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- the pangenome graph builder☆419Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆316Updated 9 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆400Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline☆338Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆367Updated 3 weeks ago
- ☆238Updated 9 months ago
- Genome assembly evaluation tool☆422Updated 4 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆395Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆329Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆586Updated this week
- hybrid assembly pipeline for bacterial genomes☆584Updated 7 months ago
- Fast genome-wide functional annotation through orthology assignment☆596Updated 10 months ago
- 🌈 Interactive analysis of metagenomics data☆409Updated 6 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆488Updated last week
- Genome annotation with AUGUSTUS☆297Updated 2 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆416Updated last year