mummer4 / mummerLinks
Mummer alignment tool
☆548Updated last year
Alternatives and similar repositories for mummer
Users that are interested in mummer are comparing it to the libraries listed below
Sorting:
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆445Updated 3 months ago
- Synteny and Rearrangement Identifier☆446Updated 9 months ago
- adapter trimmer for Oxford Nanopore reads☆380Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆553Updated last year
- Sequence correction provided by ONT Research☆499Updated last month
- Plotting scripts for long read sequencing data☆528Updated 2 months ago
- Fast and accurate de novo assembler for long reads☆397Updated last year
- Genome assembly evaluation tool☆489Updated last year
- quality filtering tool for long reads☆387Updated 4 months ago
- Eukaryotic Genome Annotation Pipeline☆378Updated 2 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆375Updated 3 years ago
- hybrid assembly pipeline for bacterial genomes☆633Updated last year
- An accurate GFF3/GTF lift over pipeline☆525Updated 2 years ago
- NCBI Prokaryotic Genome Annotation Pipeline☆365Updated last week
- Fast Whole-Genome Similarity (ANI) Estimation☆446Updated last month
- the pangenome graph builder☆477Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆365Updated 6 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆245Updated 4 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆722Updated 10 months ago
- ☆284Updated 3 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆456Updated 2 years ago
- Structural variation caller using third generation sequencing☆631Updated last month
- TransDecoder source☆300Updated 4 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆900Updated 9 months ago
- Extensive de-novo TE Annotator☆428Updated 3 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆403Updated 3 weeks ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆381Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 4 months ago
- Tool to plot synteny and structural rearrangements between genomes☆337Updated 10 months ago