jts / nanopolishLinks
Signal-level algorithms for MinION data
☆589Updated 2 years ago
Alternatives and similar repositories for nanopolish
Users that are interested in nanopolish are comparing it to the libraries listed below
Sorting:
- Cutadapt removes adapter sequences from sequencing reads☆556Updated 2 months ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆662Updated 2 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆857Updated 3 months ago
- Plotting scripts for long read sequencing data☆491Updated last week
- Sequence correction provided by ONT Research☆468Updated 2 months ago
- Copy number variant detection from targeted DNA sequencing☆582Updated this week
- Structural variation caller using third generation sequencing☆610Updated last month
- Genome assembly evaluation tool☆453Updated 8 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆624Updated 2 years ago
- adapter trimmer for Oxford Nanopore reads☆368Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆665Updated 4 months ago
- The second version of the Kraken taxonomic sequence classification system☆811Updated 2 weeks ago
- Mummer alignment tool☆521Updated 6 months ago
- A single molecule sequence assembler for genomes large and small.☆685Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Data and analysis for NA12878 genome on nanopore☆393Updated 2 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆508Updated 8 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆520Updated last year
- A complete pipeline for metagenomic analysis☆422Updated 3 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆419Updated 6 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆594Updated this week
- Rapid haploid variant calling and core genome alignment☆534Updated last year
- hybrid assembly pipeline for bacterial genomes☆605Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆435Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆493Updated 2 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆379Updated last month
- Transcript assembly and quantification for RNA-Seq☆458Updated 3 weeks ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆841Updated last week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆286Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year