lh3 / minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
☆1,769Updated last month
Related projects: ⓘ
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,515Updated last month
- Toolkit for processing sequences in FASTA/Q formats☆1,370Updated last month
- A fast and sensitive gapped read aligner☆660Updated last month
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆1,868Updated 2 months ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,606Updated last week
- SPAdes Genome Assembler☆737Updated this week
- A single molecule sequence assembler for genomes large and small.☆654Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆766Updated 3 weeks ago
- C library for high-throughput sequencing data formats☆800Updated last week
- Trinity RNA-Seq de novo transcriptome assembly☆824Updated last month
- The second version of the Kraken taxonomic sequence classification system☆708Updated last week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆741Updated 2 weeks ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆771Updated 3 months ago
- Scripts to download genomes from the NCBI FTP servers☆932Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,202Updated this week
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,282Updated this week
- Rapid prokaryotic genome annotation☆819Updated 5 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆766Updated 3 months ago
- SRA Tools☆1,101Updated this week
- Graph-based alignment (Hierarchical Graph FM index)☆470Updated last month
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆652Updated this week
- bedtools - the swiss army knife for genome arithmetic☆922Updated 2 months ago
- Bioinformatics code libraries and scripts☆485Updated last month
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆967Updated last week
- MACS -- Model-based Analysis of ChIP-Seq☆698Updated last week
- Phylogenetic orthology inference for comparative genomics☆683Updated 3 months ago
- Oxford Nanopore's Basecaller☆486Updated this week
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆864Updated this week
- Official code repository for GATK versions 4 and up☆1,678Updated this week
- A quality control analysis tool for high throughput sequencing data☆427Updated 8 months ago