A versatile pairwise aligner for genomic and spliced nucleotide sequences
☆2,262May 19, 2026Updated 5 months ago
Alternatives and similar repositories for minimap2
Users that are interested in minimap2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo assembler for single molecule sequencing reads using repeat graphs☆954Apr 3, 2026Updated 6 months ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,769Aug 7, 2026Updated 2 months ago
- A single molecule sequence assembler for genomes large and small.☆707Updated this week
- The next version of bwa-mem☆868Oct 15, 2025Updated last year
- Structural variation caller using third generation sequencing☆686Oct 18, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,454Oct 7, 2026Updated 3 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆818May 31, 2026Updated 5 months ago
- Sequence-to-graph mapper and graph generator☆493Aug 11, 2025Updated last year
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆528May 20, 2026Updated 5 months ago
- Mummer alignment tool☆579Feb 4, 2025Updated last year
- Toolkit for processing sequences in FASTA/Q formats☆1,565Jun 1, 2025Updated last year
- Signal-level algorithms for MinION data☆601Aug 5, 2023Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,973Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆360Jul 19, 2025Updated last year
- Plotting scripts for long read sequencing data☆564Oct 1, 2026Updated last month
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,605Updated this week
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆533Sep 27, 2023Updated 3 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Genome assembly evaluation tool☆522Jun 10, 2026Updated 4 months ago
- tools for working with genome variation graphs☆1,348Updated this week
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆878May 2, 2026Updated 6 months ago
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Oxford Nanopore's Basecaller☆883Sep 3, 2026Updated last month
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆679Jul 7, 2026Updated 3 months ago
- adapter trimmer for Oxford Nanopore reads☆389May 8, 2024Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆578Oct 1, 2026Updated last month
- Long read / genome alignment software☆333Dec 16, 2025Updated 10 months ago
- Align proteins to genomes with splicing and frameshift☆425Jan 5, 2026Updated 9 months ago
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆422Updated this week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆255Dec 16, 2025Updated 10 months ago
- ☆291Dec 29, 2025Updated 10 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 4 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆716Updated this week
- Official code repository for GATK versions 4 and up☆2,009Updated this week
- Fast and accurate de novo assembler for long reads☆407May 10, 2024Updated 2 years ago