lh3 / miniasmLinks
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
☆352Updated 6 months ago
Alternatives and similar repositories for miniasm
Users that are interested in miniasm are comparing it to the libraries listed below
Sorting:
- Pilon is an automated genome assembly improvement and variant detection tool☆376Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆296Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Updated last year
- Fast and frugal disk based k-mer counter☆325Updated 3 weeks ago
- quality filtering tool for long reads☆389Updated 4 months ago
- adapter trimmer for Oxford Nanopore reads☆380Updated last year
- ☆271Updated 7 months ago
- Synteny and Rearrangement Identifier☆447Updated 9 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆330Updated 4 months ago
- Fast and accurate de novo assembler for long reads☆398Updated last year
- Structural variant toolkit for VCFs☆397Updated 2 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆290Updated last month
- An overview of all nanopack tools☆280Updated 2 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆245Updated 5 years ago
- Classifier for metagenomic sequences☆270Updated 7 months ago
- Toolset for SV simulation, comparison and filtering☆411Updated 2 years ago
- Sequence correction provided by ONT Research☆499Updated 2 months ago
- Filtering and trimming of long read sequencing data☆214Updated 3 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- A comparison of different Oxford Nanopore basecallers☆316Updated 6 years ago
- Tool to plot synteny and structural rearrangements between genomes☆340Updated 10 months ago
- Mummer alignment tool☆548Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆553Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆381Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Extensive de-novo TE Annotator☆428Updated 4 months ago
- A tool to circularize genome assemblies☆252Updated last year
- the pangenome graph builder☆478Updated 2 months ago
- Reads simulator☆283Updated 4 years ago
- Long read / genome alignment software☆311Updated last month