Ultrafast de novo assembly for long noisy reads (though having no consensus step)
☆353Jul 19, 2025Updated 10 months ago
Alternatives and similar repositories for miniasm
Users that are interested in miniasm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Sep 20, 2017Updated 8 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated 2 years ago
- A single molecule sequence assembler for genomes large and small.☆700Feb 24, 2026Updated 3 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆381Apr 10, 2022Updated 4 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆530Sep 27, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,183Apr 25, 2026Updated last month
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Jul 30, 2019Updated 6 years ago
- Signal-level algorithms for MinION data☆596Aug 5, 2023Updated 2 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆930Apr 3, 2026Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆250Dec 16, 2025Updated 5 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆670Dec 3, 2022Updated 3 years ago
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year
- hybrid assembly pipeline for bacterial genomes☆641Jul 25, 2024Updated last year
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Find all significant local alignments between reads☆141Jul 3, 2024Updated last year
- Sequence-to-graph mapper and graph generator☆478Aug 11, 2025Updated 9 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- Sequence correction provided by ONT Research☆513Apr 8, 2026Updated last month
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 10 months ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 7 years ago
- Ultra-fast de novo assembler using long noisy reads☆136Feb 24, 2021Updated 5 years ago
- Yet another k-mer analyzer☆172Dec 30, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Mummer alignment tool☆558Feb 4, 2025Updated last year
- A tool to circularize genome assemblies☆256Apr 6, 2024Updated 2 years ago
- ☆286Dec 29, 2025Updated 4 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆81Mar 2, 2026Updated 2 months ago
- Graphical Fragment Assembly (GFA) Format Specification☆219Aug 21, 2024Updated last year
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Long read / genome alignment software☆317Dec 16, 2025Updated 5 months ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- quality filtering tool for long reads☆404Sep 17, 2025Updated 8 months ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆147Mar 19, 2026Updated 2 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆775May 15, 2026Updated last week