chanzuckerberg / shasta
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
☆272Updated 2 years ago
Alternatives and similar repositories for shasta:
Users that are interested in shasta are comparing it to the libraries listed below
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 4 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆214Updated last year
- Synteny and Rearrangement Identifier☆367Updated 2 weeks ago
- An overview of all nanopack tools☆236Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆265Updated last week
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- Long read / genome alignment software☆277Updated 4 months ago
- quality filtering tool for long reads☆322Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆278Updated 10 months ago
- VGP repository for the genome assembly working group☆190Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆183Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆353Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆218Updated 2 months ago
- Toolset for SV simulation, comparison and filtering☆373Updated last year
- Structural variant toolkit for VCFs☆342Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆247Updated 4 months ago
- A tool to circularize genome assemblies☆238Updated 11 months ago
- the pangenome graph builder☆419Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆299Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆316Updated 9 months ago
- Ultra-fast de novo assembler using long noisy reads☆132Updated 4 years ago
- De novo genome assembler for long uncorrected reads☆213Updated last year
- Jasmine: SV Merging Across Samples☆207Updated 2 months ago
- Scan contig files against PubMLST typing schemes☆218Updated 2 years ago
- A minimap2 frontend for PacBio native data formats☆186Updated 2 weeks ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆321Updated 2 weeks ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆230Updated last year
- haplotypic duplication identification tool☆227Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆266Updated last month
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆159Updated last year