mikolmogorov / Ragout
Chromosome-level scaffolding using multiple references
☆159Updated 5 months ago
Alternatives and similar repositories for Ragout:
Users that are interested in Ragout are comparing it to the libraries listed below
- Pairwise SNP distance matrix from a FASTA sequence alignment☆129Updated 11 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆157Updated last year
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆141Updated last week
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆174Updated last month
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆96Updated 10 months ago
- ☆132Updated 3 weeks ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 3 months ago
- Metagenomic classification of long-read sequencing data☆75Updated last week
- Nanopore data assembler☆143Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆128Updated 3 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆109Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆115Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆135Updated last month
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- An accurate and ultra-fast hybrid genome assembler☆83Updated 10 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated last week
- Analysis components from Oxford Nanopore Research☆93Updated 5 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆156Updated 2 weeks ago
- Constructing a pangenome gene graph☆181Updated 7 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆112Updated 9 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆133Updated 2 months ago
- De novo assembly from Oxford Nanopore reads.☆78Updated this week
- A scalable bacterial genome assembly, annotation and analysis pipeline☆72Updated last year
- Identify and find telomeres, or telomeric repeats in a genome.☆118Updated 2 weeks ago
- Comparison of multiple long read datasets☆122Updated 2 months ago
- Python programs for processing GFF3 files☆96Updated 10 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆111Updated last month
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 3 years ago