Alternatives and similar repositories for Ragout

Users that are interested in Ragout are comparing it to the libraries listed below

• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆105Updated 4 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆152Updated 3 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆139Updated 6 months ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆109Updated 5 months ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆122Updated 2 years ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆113Updated 4 months ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆77Updated last month
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 4 years ago
• adigenova / wengan
  An accurate and ultra-fast hybrid genome assembler
  ☆85Updated last year
• sanger-pathogens / assembly-stats
  Get assembly statistics from FASTA and FASTQ files
  ☆123Updated 2 years ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 4 years ago
• paoloshasta / shasta
  De novo assembly from Oxford Nanopore reads.
  ☆86Updated 4 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated last month
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆86Updated 10 months ago
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆81Updated 4 years ago
• metagenlab / mummer2circos
  Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
  ☆106Updated last year
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆114Updated 4 months ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆95Updated last year
• tolkit / telomeric-identifier
  Identify and find telomeres, or telomeric repeats in a genome.
  ☆145Updated 3 months ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆141Updated last year
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆103Updated 8 months ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆90Updated last year
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆104Updated last month
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆150Updated last week
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆52Updated 10 months ago
• SorenKarst / longread_umi
  ☆79Updated 4 years ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆100Updated 8 months ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆116Updated last year
• AntonBankevich / LJA
  ☆117Updated 3 weeks ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆117Updated 2 years ago