Alternatives and similar repositories for Ragout

Users that are interested in Ragout are comparing it to the libraries listed below

• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆104Updated 3 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆133Updated 4 months ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆90Updated last year
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 4 years ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆106Updated 3 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆151Updated last month
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 4 years ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆121Updated 2 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆108Updated last year
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆137Updated last year
• SorenKarst / longread_umi
  ☆78Updated 4 years ago
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆81Updated 4 years ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆116Updated 2 years ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆94Updated 11 months ago
• mjsull / Easyfig
  Development version of Easyfig
  ☆99Updated last year
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆113Updated 4 years ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆111Updated 2 months ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆77Updated 2 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆158Updated 3 years ago
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆136Updated last year
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆115Updated last year
• sanger-pathogens / assembly-stats
  Get assembly statistics from FASTA and FASTQ files
  ☆121Updated 2 years ago
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆81Updated 3 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 2 months ago
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆168Updated this week
• marbl / parsnp
  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…
  ☆145Updated 3 months ago
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆100Updated 3 years ago
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆95Updated last year
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆142Updated last month
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆82Updated 8 months ago