Alternatives and similar repositories for Ragout:

Users that are interested in Ragout are comparing it to the libraries listed below

• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆142Updated last month
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆146Updated 2 years ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆140Updated 4 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆200Updated 2 weeks ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆99Updated 11 months ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆93Updated last month
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆98Updated this week
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆177Updated 3 weeks ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆132Updated last year
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆126Updated 3 months ago
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆88Updated last week
• adigenova / wengan
  An accurate and ultra-fast hybrid genome assembler
  ☆83Updated 11 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆132Updated last month
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆114Updated 10 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆160Updated last year
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆140Updated last year
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆77Updated last week
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆104Updated 3 years ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆113Updated 3 weeks ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆93Updated 6 months ago
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆139Updated 3 months ago
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆122Updated last month
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆129Updated last week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆142Updated last week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 9 months ago
• lskatz / mashtree
  Create a tree using Mash distances
  ☆159Updated last year
• rhysf / Synima
  Synteny Imager
  ☆60Updated 7 months ago