mikolmogorov / RagoutLinks
Chromosome-level scaffolding using multiple references
☆160Updated 8 months ago
Alternatives and similar repositories for Ragout
Users that are interested in Ragout are comparing it to the libraries listed below
Sorting:
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆136Updated last year
- A fast whole-genome aligner based on de Bruijn graphs☆150Updated 3 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆104Updated last year
- Metagenomic classification of long-read sequencing data☆83Updated 3 weeks ago
- Create statistic summary of an Oxford Nanopore read dataset☆113Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆167Updated last year
- Nanopore data assembler☆156Updated 3 years ago
- Comparison of multiple long read datasets☆132Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆127Updated 3 weeks ago
- Interactive quality assessment of genome assemblies☆99Updated 3 weeks ago
- Foreign Contamination Screening caller scripts and documentation☆129Updated 2 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 7 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆115Updated 3 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆137Updated 3 months ago
- Long-read mock community experiments☆105Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆75Updated this week
- Analysis components from Oxford Nanopore Research☆93Updated 9 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated last month
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated last year
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆57Updated last year
- SKESA assembler☆119Updated 7 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆182Updated 3 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated this week
- Assembly statistic visualisation☆90Updated last year
- A genome completeness evaluation tool based on miniprot☆213Updated last month
- Research release basecalling models and configurations☆110Updated 2 weeks ago
- a short-read polishing tool for long-read assemblies☆166Updated 11 months ago