Sequence-to-graph mapper and graph generator
☆482Aug 11, 2025Updated 10 months ago
Alternatives and similar repositories for minigraph
Users that are interested in minigraph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 6 months ago
- ☆289Dec 29, 2025Updated 6 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆246May 1, 2026Updated 2 months ago
- alignment to variation graph inducer☆161Jun 17, 2026Updated 2 weeks ago
- the pangenome graph builder☆506Mar 31, 2026Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- tools for working with genome variation graphs☆1,323Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,204May 19, 2026Updated last month
- k-mer based assembly evaluation☆344May 21, 2026Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆401Apr 22, 2026Updated 2 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆690Jun 23, 2026Updated last week
- Long read / genome alignment software☆325Dec 16, 2025Updated 6 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆784May 31, 2026Updated last month
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- Constructing a pangenome gene graph☆209Aug 11, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Jun 21, 2026Updated last week
- Graphical Fragment Assembly (GFA) Format Specification☆220Aug 21, 2024Updated last year
- Assembled Genomes Compressor☆183May 6, 2026Updated last month
- Structural variation caller using third generation sequencing☆666Jun 24, 2026Updated last week
- ☆101Apr 22, 2024Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆113Jun 6, 2021Updated 5 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆75Feb 19, 2019Updated 7 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆567Feb 14, 2024Updated 2 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆529Sep 27, 2023Updated 2 years ago
- Synteny and Rearrangement Identifier☆474Jun 20, 2026Updated last week
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Jasmine: SV Merging Across Samples☆255Dec 20, 2024Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An accurate GFF3/GTF lift over pipeline☆546Aug 1, 2023Updated 2 years ago
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- displays multiple genomic sequences in the form of a tube map☆226Nov 12, 2025Updated 7 months ago
- ☆121Jun 16, 2026Updated 2 weeks ago
- haplotypic duplication identification tool☆289Oct 30, 2025Updated 8 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 10 months ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago