Sequence-to-graph mapper and graph generator
☆491Aug 11, 2025Updated last year
Alternatives and similar repositories for minigraph
Users that are interested in minigraph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆254Dec 16, 2025Updated 9 months ago
- ☆291Dec 29, 2025Updated 9 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated 3 weeks ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated 2 months ago
- the pangenome graph builder☆519Jul 24, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- tools for working with genome variation graphs☆1,343Updated this week
- k-mer based assembly evaluation☆354Jul 6, 2026Updated 3 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆421Aug 25, 2026Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,254May 19, 2026Updated 4 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆713Updated this week
- Long read / genome alignment software☆331Dec 16, 2025Updated 9 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆816May 31, 2026Updated 4 months ago
- Yet another k-mer analyzer☆178Dec 30, 2025Updated 9 months ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last week
- Graphical Fragment Assembly (GFA) Format Specification☆222Aug 21, 2024Updated 2 years ago
- Assembled Genomes Compressor (AGC) squeezing 290 GB of Human Pangenome Project assemblies down to <1.5 GB (>190× ratio), with sample and …☆187Updated this week
- Structural variation caller using third generation sequencing☆684Sep 10, 2026Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- A fast approximate aligner for long DNA sequences☆292Oct 11, 2024Updated 2 years ago
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Oct 1, 2026Updated last week
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆533Sep 27, 2023Updated 3 years ago
- Synteny and Rearrangement Identifier☆491Jul 1, 2026Updated 3 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆357Jul 27, 2026Updated 2 months ago
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An accurate GFF3/GTF lift over pipeline☆559Aug 1, 2023Updated 3 years ago
- haplotypic duplication identification tool☆296Oct 30, 2025Updated 11 months ago
- ☆124Sep 29, 2026Updated last week
- SRF: Satellite Repeat Finder☆110Jan 8, 2024Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆145Aug 24, 2025Updated last year
- displays multiple genomic sequences in the form of a tube map☆229Nov 12, 2025Updated 10 months ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago