lh3 / minigraphLinks
Sequence-to-graph mapper and graph generator
☆454Updated 2 weeks ago
Alternatives and similar repositories for minigraph
Users that are interested in minigraph are comparing it to the libraries listed below
Sorting:
- the pangenome graph builder☆444Updated 3 weeks ago
- Structural variant toolkit for VCFs☆374Updated 3 weeks ago
- Structural variation caller using third generation sequencing☆612Updated this week
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Updated last year
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆298Updated 3 weeks ago
- Fast and accurate de novo assembler for long reads☆392Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆527Updated last year
- adapter trimmer for Oxford Nanopore reads☆369Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- Toolset for SV simulation, comparison and filtering☆395Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆356Updated 2 weeks ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆288Updated last year
- Fast and frugal disk based k-mer counter☆299Updated last month
- Long read / genome alignment software☆297Updated 9 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆599Updated this week
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆337Updated last month
- Mummer alignment tool☆525Updated 6 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆672Updated 5 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆275Updated 6 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆422Updated 7 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆269Updated last week
- quality filtering tool for long reads☆363Updated 2 weeks ago
- Plotting scripts for long read sequencing data☆497Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated 10 months ago
- Sequence correction provided by ONT Research☆477Updated last week
- Synteny and Rearrangement Identifier☆403Updated 4 months ago
- An accurate GFF3/GTF lift over pipeline☆498Updated 2 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆227Updated 2 months ago
- Graphical Fragment Assembly (GFA) Format Specification☆213Updated last year