lh3 / minigraph
Sequence-to-graph mapper and graph generator
☆427Updated 7 months ago
Alternatives and similar repositories for minigraph:
Users that are interested in minigraph are comparing it to the libraries listed below
- Toolset for SV simulation, comparison and filtering☆366Updated last year
- Structural variation caller using third generation sequencing☆573Updated this week
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆295Updated 10 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆567Updated 3 weeks ago
- Fast and accurate de novo assembler for long reads☆376Updated 8 months ago
- Mummer alignment tool☆477Updated last month
- Long read / genome alignment software☆268Updated 2 months ago
- the pangenome graph builder☆406Updated 2 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆345Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆485Updated 11 months ago
- An accurate GFF3/GTF lift over pipeline☆454Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆315Updated last week
- Synteny and Rearrangement Identifier☆355Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆540Updated this week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆252Updated last week
- Graphical Fragment Assembly (GFA) Format Specification☆203Updated 4 months ago
- Transcript assembly and quantification for RNA-Seq☆399Updated last week
- SortMeRNA: next-generation sequence filtering and alignment tool☆250Updated 2 weeks ago
- 3D de novo assembly (3D DNA) pipeline☆207Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆273Updated 3 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆346Updated 3 weeks ago
- ☆263Updated last month
- structural variant calling and genotyping with existing tools, but, smoothly.☆240Updated 7 months ago
- Genome assembly evaluation tool☆416Updated 2 months ago
- Structural variant toolkit for VCFs☆335Updated this week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆374Updated 3 weeks ago
- Genome browser and variant annotation☆289Updated this week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆217Updated 5 months ago
- Plot structural variant signals from many BAMs and CRAMs☆535Updated 6 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆239Updated 2 months ago