Sequence-to-graph mapper and graph generator
☆475Aug 11, 2025Updated 8 months ago
Alternatives and similar repositories for minigraph
Users that are interested in minigraph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Dec 16, 2025Updated 3 months ago
- ☆286Dec 29, 2025Updated 3 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆239Feb 10, 2026Updated 2 months ago
- alignment to variation graph inducer☆158Mar 27, 2026Updated 2 weeks ago
- the pangenome graph builder☆490Mar 31, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- tools for working with genome variation graphs☆1,306Updated this week
- k-mer based assembly evaluation☆341Jun 28, 2024Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,153Feb 13, 2026Updated last month
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆387Mar 11, 2026Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆669Apr 3, 2026Updated last week
- Long read / genome alignment software☆312Dec 16, 2025Updated 3 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆764Mar 18, 2025Updated last year
- Yet another k-mer analyzer☆166Dec 30, 2025Updated 3 months ago
- Constructing a pangenome gene graph☆205Aug 11, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- base-accurate DNA sequence alignments using WFA and mashmap3☆214Mar 20, 2026Updated 3 weeks ago
- Graphical Fragment Assembly (GFA) Format Specification☆220Aug 21, 2024Updated last year
- Assembled Genomes Compressor☆179Mar 26, 2026Updated 2 weeks ago
- Structural variation caller using third generation sequencing☆645Apr 2, 2026Updated last week
- ☆102Apr 22, 2024Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆74Feb 19, 2019Updated 7 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆308Mar 18, 2024Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆458Mar 17, 2026Updated 3 weeks ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- An accurate GFF3/GTF lift over pipeline☆531Aug 1, 2023Updated 2 years ago
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- displays multiple genomic sequences in the form of a tube map☆223Nov 12, 2025Updated 5 months ago
- haplotypic duplication identification tool☆279Oct 30, 2025Updated 5 months ago
- ☆119Oct 10, 2025Updated 6 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 7 months ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago