SPAdes Genome Assembler
☆933May 10, 2026Updated last week
Alternatives and similar repositories for spades
Users that are interested in spades are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome assembly evaluation tool☆510Nov 14, 2024Updated last year
- Rapid prokaryotic genome annotation☆977Jan 6, 2026Updated 4 months ago
- hybrid assembly pipeline for bacterial genomes☆641Jul 25, 2024Updated last year
- Ultra-fast and memory-efficient (meta-)genome assembler☆713Oct 28, 2025Updated 6 months ago
- The second version of the Kraken taxonomic sequence classification system☆904May 14, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆598May 8, 2026Updated 2 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆408Mar 2, 2026Updated 2 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆930Apr 3, 2026Updated last month
- Accelerated BLAST compatible local sequence aligner.☆1,294May 12, 2026Updated last week
- Mass screening of contigs for antimicrobial and virulence genes☆493Apr 3, 2026Updated last month
- Prodigal Gene Prediction Software☆539Jan 23, 2024Updated 2 years ago
- Rapid haploid variant calling and core genome alignment☆585Dec 12, 2025Updated 5 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆642May 15, 2026Updated last week
- Fast Whole-Genome Similarity (ANI) Estimation☆461Dec 16, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆406Apr 29, 2026Updated 3 weeks ago
- Rapid comparison and dereplication of genomes☆340Nov 10, 2025Updated 6 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆290Nov 28, 2024Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆261Dec 13, 2025Updated 5 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 4 years ago
- Fast genome-wide functional annotation through orthology assignment☆735May 4, 2026Updated 2 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆670Dec 3, 2022Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,183Apr 25, 2026Updated 3 weeks ago
- A fast and sensitive gapped read aligner☆791Mar 7, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,361Apr 24, 2026Updated 3 weeks ago
- Mummer alignment tool☆558Feb 4, 2025Updated last year
- Read alignment statistics for metagenomics☆397Apr 8, 2026Updated last month
- Fast genome and metagenome distance estimation using MinHash☆443Sep 19, 2025Updated 8 months ago
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 6 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆470Jul 28, 2023Updated 2 years ago
- Microbial RNA annotation☆292Apr 12, 2026Updated last month
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,741Mar 22, 2025Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆333Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A single molecule sequence assembler for genomes large and small.☆700Feb 24, 2026Updated 2 months ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- Next generation sequencing reads de novo assembler.☆240Sep 20, 2025Updated 8 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 8 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆263Mar 20, 2025Updated last year
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,554May 13, 2026Updated last week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆348Mar 16, 2026Updated 2 months ago