SPAdes Genome Assembler
☆947Jun 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for spades
Users that are interested in spades are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome assembly evaluation tool☆514Jun 10, 2026Updated 3 weeks ago
- Rapid prokaryotic genome annotation☆985Jan 6, 2026Updated 5 months ago
- hybrid assembly pipeline for bacterial genomes☆645Jul 25, 2024Updated last year
- Ultra-fast and memory-efficient (meta-)genome assembler☆719Oct 28, 2025Updated 8 months ago
- The second version of the Kraken taxonomic sequence classification system☆913Jun 24, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆609May 20, 2026Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 3 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆941Apr 3, 2026Updated 2 months ago
- Accelerated BLAST compatible local sequence aligner.☆1,308Updated this week
- Mass screening of contigs for antimicrobial and virulence genes☆497Apr 3, 2026Updated 2 months ago
- Prodigal Gene Prediction Software☆542Jan 23, 2024Updated 2 years ago
- Rapid haploid variant calling and core genome alignment☆587Dec 12, 2025Updated 6 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆656May 15, 2026Updated last month
- Fast Whole-Genome Similarity (ANI) Estimation☆468Dec 16, 2025Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆413Jun 8, 2026Updated 3 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆293Nov 28, 2024Updated last year
- Rapid comparison and dereplication of genomes☆347Nov 10, 2025Updated 7 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆260Jun 11, 2026Updated 2 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆382Apr 10, 2022Updated 4 years ago
- Fast genome-wide functional annotation through orthology assignment☆749May 22, 2026Updated last month
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆672Dec 3, 2022Updated 3 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,204May 19, 2026Updated last month
- A fast and sensitive gapped read aligner☆795Jun 1, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,384Updated this week
- Mummer alignment tool☆564Feb 4, 2025Updated last year
- Read alignment statistics for metagenomics☆399Updated this week
- Fast genome and metagenome distance estimation using MinHash☆445Sep 19, 2025Updated 9 months ago
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 7 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆472Jul 28, 2023Updated 2 years ago
- Microbial RNA annotation☆300Apr 12, 2026Updated 2 months ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,752Jun 20, 2026Updated last week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆333Jun 3, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A single molecule sequence assembler for genomes large and small.☆701Jun 18, 2026Updated last week
- DAS Tool☆174May 2, 2024Updated 2 years ago
- Next generation sequencing reads de novo assembler.☆240Sep 20, 2025Updated 9 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆344Sep 11, 2025Updated 9 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆268Mar 20, 2025Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆354Mar 16, 2026Updated 3 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,573Jun 24, 2026Updated last week