ablab / spadesLinks
SPAdes Genome Assembler
☆902Updated last week
Alternatives and similar repositories for spades
Users that are interested in spades are comparing it to the libraries listed below
Sorting:
- De novo assembler for single molecule sequencing reads using repeat graphs☆895Updated 8 months ago
- Rapid prokaryotic genome annotation☆952Updated 3 weeks ago
- The second version of the Kraken taxonomic sequence classification system☆864Updated this week
- Phylogenetic orthology inference for comparative genomics☆827Updated 6 months ago
- hybrid assembly pipeline for bacterial genomes☆632Updated last year
- A single molecule sequence assembler for genomes large and small.☆696Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆693Updated 7 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆721Updated 10 months ago
- A fast and sensitive gapped read aligner☆768Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆666Updated 3 years ago
- A quality control analysis tool for high throughput sequencing data☆572Updated 3 weeks ago
- Genome assembly evaluation tool☆488Updated last year
- Rapid haploid variant calling and core genome alignment☆563Updated last month
- Scripts to download genomes from the NCBI FTP servers☆1,059Updated 6 months ago
- Mummer alignment tool☆547Updated 11 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆886Updated last month
- Gene cluster comparison figure generator☆633Updated last month
- The next version of bwa-mem☆810Updated 3 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆600Updated this week
- Official home of genome aligner based upon notion of Cactus graphs☆646Updated this week
- Plotting scripts for long read sequencing data☆526Updated last month
- Graph-based alignment (Hierarchical Graph FM index)☆523Updated this week
- Mass screening of contigs for antimicrobial and virulence genes☆469Updated last month
- Bioinformatics code libraries and scripts☆555Updated 6 months ago
- Sequence correction provided by ONT Research☆495Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆551Updated last year
- Oxford Nanopore's Basecaller☆785Updated 2 weeks ago
- A fast multi-threaded k-mer counter☆529Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆444Updated 3 months ago
- Structural variation caller using third generation sequencing☆631Updated last month