SPAdes Genome Assembler
☆956Jun 16, 2026Updated last month
Alternatives and similar repositories for spades
Users that are interested in spades are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome assembly evaluation tool☆519Jun 10, 2026Updated 2 months ago
- Rapid prokaryotic genome annotation☆993Jan 6, 2026Updated 7 months ago
- hybrid assembly pipeline for bacterial genomes☆649Jul 29, 2026Updated last week
- Ultra-fast and memory-efficient (meta-)genome assembler☆721Oct 28, 2025Updated 9 months ago
- The second version of the Kraken taxonomic sequence classification system☆928Jul 29, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆617May 20, 2026Updated 2 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆411Mar 2, 2026Updated 5 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆949Apr 3, 2026Updated 4 months ago
- Accelerated BLAST compatible local sequence aligner.☆1,313Updated this week
- Mass screening of contigs for antimicrobial and virulence genes☆506Jul 17, 2026Updated 3 weeks ago
- Prodigal Gene Prediction Software☆551Jan 23, 2024Updated 2 years ago
- Rapid haploid variant calling and core genome alignment☆594Dec 12, 2025Updated 7 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Updated this week
- Fast Whole-Genome Similarity (ANI) Estimation☆477Dec 16, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆420Updated this week
- Rapid comparison and dereplication of genomes☆351Jul 16, 2026Updated 3 weeks ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆298Nov 28, 2024Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆262Jun 11, 2026Updated 2 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆385Apr 10, 2022Updated 4 years ago
- Fast genome-wide functional annotation through orthology assignment☆760Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆672Jul 7, 2026Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,230May 19, 2026Updated 2 months ago
- A fast and sensitive gapped read aligner☆809Jun 1, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,410Jul 30, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- Mummer alignment tool☆571Feb 4, 2025Updated last year
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 9 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- Fast genome and metagenome distance estimation using MinHash☆450Sep 19, 2025Updated 10 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆475Jul 28, 2023Updated 3 years ago
- Microbial RNA annotation☆305Apr 12, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,765Updated this week
- A single molecule sequence assembler for genomes large and small.☆707Jun 18, 2026Updated last month
- Next generation sequencing reads de novo assembler.☆242Sep 20, 2025Updated 10 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆347Jul 24, 2026Updated 2 weeks ago
- quality filtering tool for long reads☆412Sep 17, 2025Updated 10 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,589Jul 8, 2026Updated last month
- DAS Tool☆177May 2, 2024Updated 2 years ago