ablab / spadesLinks
SPAdes Genome Assembler
☆887Updated 2 weeks ago
Alternatives and similar repositories for spades
Users that are interested in spades are comparing it to the libraries listed below
Sorting:
- Rapid prokaryotic genome annotation☆946Updated 2 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆884Updated 7 months ago
- Phylogenetic orthology inference for comparative genomics☆822Updated 5 months ago
- The second version of the Kraken taxonomic sequence classification system☆856Updated 3 weeks ago
- hybrid assembly pipeline for bacterial genomes☆628Updated last year
- Fast genome-wide functional annotation through orthology assignment☆682Updated 6 months ago
- A quality control analysis tool for high throughput sequencing data☆561Updated 2 weeks ago
- A single molecule sequence assembler for genomes large and small.☆694Updated last month
- Genome assembly evaluation tool☆488Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆582Updated 3 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆711Updated 9 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆882Updated last week
- The next version of bwa-mem☆804Updated 2 months ago
- A fast and sensitive gapped read aligner☆760Updated last month
- Mummer alignment tool☆542Updated 10 months ago
- Prodigal Gene Prediction Software☆523Updated last year
- Scripts to download genomes from the NCBI FTP servers☆1,053Updated 5 months ago
- Bioinformatics code libraries and scripts☆552Updated 5 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆657Updated 3 years ago
- Rapid haploid variant calling and core genome alignment☆557Updated 2 weeks ago
- Gene cluster comparison figure generator☆627Updated last week
- Mass screening of contigs for antimicrobial and virulence genes☆466Updated 3 weeks ago
- Oxford Nanopore's Basecaller☆778Updated last month
- Plotting scripts for long read sequencing data☆521Updated 3 weeks ago
- Official home of genome aligner based upon notion of Cactus graphs☆637Updated 2 weeks ago
- A complete pipeline for metagenomic analysis☆440Updated 2 weeks ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆559Updated 3 weeks ago
- Sequence correction provided by ONT Research☆489Updated 3 weeks ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆549Updated last week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆452Updated 2 years ago