ruanjue / wtdbg2Links
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
☆520Updated last year
Alternatives and similar repositories for wtdbg2
Users that are interested in wtdbg2 are comparing it to the libraries listed below
Sorting:
- Fast and accurate de novo assembler for long reads☆388Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆632Updated 2 months ago
- Structural variation caller using third generation sequencing☆594Updated last month
- quality filtering tool for long reads☆339Updated last year
- Plotting scripts for long read sequencing data☆476Updated 3 weeks ago
- Official home of genome aligner based upon notion of Cactus graphs☆576Updated last week
- Mummer alignment tool☆510Updated 4 months ago
- ☆251Updated last year
- Sequence-to-graph mapper and graph generator☆444Updated last year
- The next version of bwa-mem☆756Updated 10 months ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆321Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆837Updated last month
- Program for aligning DNA sequences, a pairwise aligner.☆221Updated 2 months ago
- Fast and frugal disk based k-mer counter☆292Updated 6 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆510Updated last year
- Genome assembly evaluation tool☆440Updated 6 months ago
- adapter trimmer for Oxford Nanopore reads☆362Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆301Updated last year
- Sequence correction provided by ONT Research☆458Updated 2 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆363Updated 3 years ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆254Updated 5 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆279Updated last year
- the pangenome graph builder☆433Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆322Updated last year
- A comparison of different Oxford Nanopore basecallers☆316Updated 5 years ago
- Next generation sequencing reads de novo assembler.☆232Updated last year
- Toolset for SV simulation, comparison and filtering☆379Updated last year
- A single molecule sequence assembler for genomes large and small.☆677Updated last month
- An overview of all nanopack tools☆252Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆599Updated 10 months ago