ruanjue / wtdbg2Links
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
☆528Updated last year
Alternatives and similar repositories for wtdbg2
Users that are interested in wtdbg2 are comparing it to the libraries listed below
Sorting:
- Fast and accurate de novo assembler for long reads☆395Updated last year
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆340Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆529Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆681Updated 6 months ago
- Mummer alignment tool☆524Updated 7 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆289Updated last year
- Toolset for SV simulation, comparison and filtering☆396Updated last year
- Structural variation caller using third generation sequencing☆616Updated 3 weeks ago
- Plotting scripts for long read sequencing data☆502Updated 3 weeks ago
- Sequence-to-graph mapper and graph generator☆456Updated last month
- adapter trimmer for Oxford Nanopore reads☆372Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- Sequence correction provided by ONT Research☆482Updated last month
- Genome assembly evaluation tool☆466Updated 10 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- quality filtering tool for long reads☆365Updated last week
- Extensive de-novo TE Annotator☆406Updated 2 months ago
- A single molecule sequence assembler for genomes large and small.☆690Updated 2 weeks ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Updated 2 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆609Updated this week
- A comparison of different Oxford Nanopore basecallers☆315Updated 6 years ago
- An accurate GFF3/GTF lift over pipeline☆504Updated 2 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆635Updated 2 years ago
- Fast and frugal disk based k-mer counter☆300Updated 2 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆227Updated 3 months ago
- Classifier for metagenomic sequences☆266Updated 3 months ago
- Next generation sequencing reads de novo assembler.☆237Updated this week
- Structural variant toolkit for VCFs☆378Updated 2 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆872Updated 4 months ago