ruanjue / wtdbg2View external linksLinks
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
☆529Sep 27, 2023Updated 2 years ago
Alternatives and similar repositories for wtdbg2
Users that are interested in wtdbg2 are comparing it to the libraries listed below
Sorting:
- De novo assembler for single molecule sequencing reads using repeat graphs☆903May 2, 2025Updated 9 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Oct 13, 2022Updated 3 years ago
- Fast and accurate de novo assembler for long reads☆398May 10, 2024Updated last year
- A single molecule sequence assembler for genomes large and small.☆693Nov 13, 2025Updated 3 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆296May 9, 2024Updated last year
- Ultra-fast de novo assembler using long noisy reads☆136Feb 24, 2021Updated 4 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆352Jul 19, 2025Updated 6 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Sequence-to-graph mapper and graph generator☆470Aug 11, 2025Updated 6 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,126Dec 12, 2025Updated 2 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆742Mar 18, 2025Updated 10 months ago
- Fast and accurately polish the genome generated by long reads.☆240Jan 9, 2025Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆666Dec 3, 2022Updated 3 years ago
- Nanopore data assembler☆165Mar 27, 2022Updated 3 years ago
- A fast approximate aligner for long DNA sequences☆286Oct 11, 2024Updated last year
- k-mer based assembly evaluation☆338Jun 28, 2024Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Mar 18, 2024Updated last year
- Structural variation caller using third generation sequencing☆634Dec 18, 2025Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- Long read / genome alignment software☆309Dec 16, 2025Updated 2 months ago
- ☆271Jun 26, 2025Updated 7 months ago
- Mummer alignment tool☆548Feb 4, 2025Updated last year
- Extensive de-novo TE Annotator☆429Oct 12, 2025Updated 4 months ago
- Sequence correction provided by ONT Research☆499Dec 8, 2025Updated 2 months ago
- adapter trimmer for Oxford Nanopore reads☆380May 8, 2024Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Nov 18, 2022Updated 3 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆117Sep 11, 2020Updated 5 years ago
- quality filtering tool for long reads☆389Sep 17, 2025Updated 5 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆554Feb 14, 2024Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆375Apr 10, 2022Updated 3 years ago
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 3 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 4 years ago
- Yet another k-mer analyzer☆160Dec 30, 2025Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆235Dec 29, 2023Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆632Jul 25, 2024Updated last year
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆111Oct 2, 2020Updated 5 years ago
- ☆284Dec 29, 2025Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆558Jul 13, 2024Updated last year
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago