ruanjue / wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
☆513Updated last year
Related projects ⓘ
Alternatives and complementary repositories for wtdbg2
- Fast and accurate de novo assembler for long reads☆370Updated 6 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆549Updated last month
- Mummer alignment tool☆466Updated this week
- Structural variation caller using third generation sequencing☆561Updated last week
- The next version of bwa-mem☆722Updated 3 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆474Updated 9 months ago
- Genome assembly evaluation tool☆410Updated last week
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆293Updated 8 months ago
- ☆221Updated 5 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆526Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆789Updated 2 months ago
- A comparison of different Oxford Nanopore basecallers☆314Updated 5 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆307Updated 11 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆272Updated 6 months ago
- A single molecule sequence assembler for genomes large and small.☆660Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆308Updated 5 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆341Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆567Updated 4 months ago
- Plotting scripts for long read sequencing data☆435Updated last month
- Sequence correction provided by ONT Research☆423Updated last month
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Updated 2 years ago
- Extensive de-novo TE Annotator☆349Updated 3 weeks ago
- adapter trimmer for Oxford Nanopore reads☆340Updated 6 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆200Updated 2 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆294Updated last year
- Classifier for metagenomic sequences☆250Updated last month
- quality filtering tool for long reads☆292Updated last year
- the pangenome graph builder☆395Updated last week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆246Updated this week
- 3D de novo assembly (3D DNA) pipeline☆207Updated 11 months ago