Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
☆530Sep 27, 2023Updated 2 years ago
Alternatives and similar repositories for wtdbg2
Users that are interested in wtdbg2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo assembler for single molecule sequencing reads using repeat graphs☆922Apr 3, 2026Updated last month
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Fast and accurate de novo assembler for long reads☆400May 10, 2024Updated last year
- A single molecule sequence assembler for genomes large and small.☆700Feb 24, 2026Updated 2 months ago
- Ultra-fast de novo assembler using long noisy reads☆136Feb 24, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆353Jul 19, 2025Updated 9 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,166Apr 25, 2026Updated 2 weeks ago
- Nanopore data assembler☆168Mar 27, 2022Updated 4 years ago
- Sequence-to-graph mapper and graph generator☆477Aug 11, 2025Updated 8 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆769Apr 15, 2026Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆669Dec 3, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- ☆273Jun 26, 2025Updated 10 months ago
- Mummer alignment tool☆558Feb 4, 2025Updated last year
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- Structural variation caller using third generation sequencing☆651Apr 2, 2026Updated last month
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated last year
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆111Oct 2, 2020Updated 5 years ago
- Long read / genome alignment software☆317Dec 16, 2025Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Sequence correction provided by ONT Research☆508Apr 8, 2026Updated last month
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆117Sep 11, 2020Updated 5 years ago
- ☆71Apr 28, 2020Updated 6 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 4 years ago
- haplotypic duplication identification tool☆284Oct 30, 2025Updated 6 months ago
- Extensive de-novo TE Annotator☆443Apr 5, 2026Updated last month
- adapter trimmer for Oxford Nanopore reads☆386May 8, 2024Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆78Dec 4, 2019Updated 6 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- quality filtering tool for long reads☆403Sep 17, 2025Updated 7 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174May 30, 2021Updated 4 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Fast genome analysis from unassembled short reads☆320Apr 8, 2024Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year