Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
☆532Sep 27, 2023Updated 3 years ago
Alternatives and similar repositories for wtdbg2
Users that are interested in wtdbg2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo assembler for single molecule sequencing reads using repeat graphs☆951Apr 3, 2026Updated 5 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Fast and accurate de novo assembler for long reads☆407May 10, 2024Updated 2 years ago
- A single molecule sequence assembler for genomes large and small.☆709Sep 10, 2026Updated 2 weeks ago
- Ultra-fast de novo assembler using long noisy reads☆137Feb 24, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆358Jul 19, 2025Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,249May 19, 2026Updated 4 months ago
- Nanopore data assembler☆171Mar 27, 2022Updated 4 years ago
- Sequence-to-graph mapper and graph generator☆489Aug 11, 2025Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆815May 31, 2026Updated 3 months ago
- Fast and accurately polish the genome generated by long reads.☆247Jan 9, 2025Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆680Jul 7, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- ☆278Jun 26, 2025Updated last year
- Mummer alignment tool☆575Feb 4, 2025Updated last year
- k-mer based assembly evaluation☆355Jul 6, 2026Updated 2 months ago
- Structural variation caller using third generation sequencing☆680Sep 10, 2026Updated 2 weeks ago
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆111Oct 2, 2020Updated 5 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆291Oct 11, 2024Updated last year
- Long read / genome alignment software☆331Dec 16, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆71Apr 28, 2020Updated 6 years ago
- haplotypic duplication identification tool☆295Oct 30, 2025Updated 10 months ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆528May 20, 2026Updated 4 months ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Sep 11, 2020Updated 6 years ago
- Extensive de-novo TE Annotator☆469Sep 10, 2026Updated 2 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆389Apr 10, 2022Updated 4 years ago
- adapter trimmer for Oxford Nanopore reads☆388May 8, 2024Updated 2 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆245Dec 29, 2023Updated 2 years ago
- quality filtering tool for long reads☆417Sep 17, 2025Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 5 years ago
- Yet another k-mer analyzer☆177Dec 30, 2025Updated 8 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- Fast genome analysis from unassembled short reads☆328Apr 8, 2024Updated 2 years ago