Visualise and analyse nanopore (ONT) raw signals
☆129Jun 11, 2026Updated this week
Alternatives and similar repositories for squigualiser
Users that are interested in squigualiser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆85Jan 6, 2025Updated last year
- a tool for simulating nanopore raw signal data☆78Mar 4, 2026Updated 3 months ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆164Mar 19, 2026Updated 2 months ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 3 months ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Jan 28, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- lossless nanopore pod5 <=> s/blow5 file conversion☆48Apr 30, 2026Updated last month
- Predictive kmer models for development use☆64Jun 6, 2023Updated 3 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆43Feb 13, 2026Updated 4 months ago
- Methylation/modified base calling separated from basecalling.☆187Sep 17, 2024Updated last year
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- slow5lib is a software library for reading & writing SLOW5 files.☆48Apr 17, 2026Updated last month
- Oxford Nanopore's Basecaller☆840May 20, 2026Updated 3 weeks ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Mar 3, 2026Updated 3 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated this week
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 8 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 3 months ago
- Pod5: a high performance file format for nanopore reads.☆175Mar 31, 2026Updated 2 months ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Jun 4, 2026Updated last week
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- A library and tool for accessing remote BLOW5 files.☆24Jun 3, 2026Updated last week
- GPU CRF-CTC decoding for nanopore basecalling☆15Jun 1, 2026Updated 2 weeks ago
- A bioinformatics tool for working with modified bases☆267Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A simplified version of Dorado built on top of S/BLOW5 format.☆39Jun 4, 2026Updated last week
- A new high-resolution long-read metagenome assembler for even noisy reads☆154Apr 5, 2026Updated 2 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆255Jun 5, 2026Updated last week
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 8 months ago
- ☆15Feb 10, 2025Updated last year
- Detection of m6A from direct RNA-Seq data☆131May 19, 2025Updated last year
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆43Apr 16, 2026Updated 2 months ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆69Jan 1, 2026Updated 5 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆161Jan 23, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated 2 months ago
- direct RNA nanopore sequencing barcode design and demultiplexing☆20Apr 26, 2026Updated last month
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆369Jun 9, 2026Updated last week
- A PyTorch Basecaller for Oxford Nanopore Reads☆432Feb 20, 2026Updated 3 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- ☆10Mar 11, 2025Updated last year
- Set of tools to manipulate and visualize modified base bam files☆61Aug 2, 2022Updated 3 years ago