hiruna72 / squigualiserView external linksLinks
Visualise and analyse nanopore (ONT) raw signals
☆128Dec 12, 2025Updated 2 months ago
Alternatives and similar repositories for squigualiser
Users that are interested in squigualiser are comparing it to the libraries listed below
Sorting:
- ☆83Jan 6, 2025Updated last year
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated 2 weeks ago
- a tool for simulating nanopore raw signal data☆72Jan 30, 2026Updated 2 weeks ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆46Feb 3, 2026Updated last week
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆101Jan 28, 2026Updated 2 weeks ago
- A simple toolkit for manipulating nanopore signal data☆19Sep 24, 2024Updated last year
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆42Jan 23, 2026Updated 3 weeks ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- Oxford Nanopore's Basecaller☆794Jan 13, 2026Updated last month
- Methylation/modified base calling separated from basecalling.☆182Sep 17, 2024Updated last year
- slow5lib is a software library for reading & writing SLOW5 files.☆47Jan 28, 2026Updated 2 weeks ago
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 4 months ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated 10 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆121Feb 5, 2026Updated last week
- Pod5: a high performance file format for nanopore reads.☆171Nov 19, 2025Updated 2 months ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Jul 8, 2025Updated 7 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆239Feb 3, 2026Updated last week
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Jan 22, 2026Updated 3 weeks ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Dec 24, 2025Updated last month
- A bioinformatics tool for working with modified bases☆247Jan 19, 2026Updated 3 weeks ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Jan 13, 2026Updated last month
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆39Dec 23, 2025Updated last month
- A library and tool for accessing remote BLOW5 files.☆24Feb 5, 2026Updated last week
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆17Oct 13, 2025Updated 4 months ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 2 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆330Sep 25, 2025Updated 4 months ago
- Graph-based assembly phasing☆91Nov 25, 2025Updated 2 months ago
- a short-read polishing tool for long-read assemblies☆206Sep 19, 2025Updated 4 months ago
- Rust bindings to minimap2 library☆108Feb 2, 2026Updated last week
- Basecalling configuration prediction through FASTQ files☆32Nov 24, 2025Updated 2 months ago
- Detection of m6A from direct RNA-Seq data☆131May 19, 2025Updated 8 months ago
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated 10 months ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆63Jan 1, 2026Updated last month
- A local-haplotagging-based small and structural variant caller☆94Jan 14, 2026Updated 3 weeks ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆428Jan 14, 2026Updated 3 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆168Feb 2, 2026Updated last week
- a long read simulator that can imitate many types of read problems☆267Jul 22, 2024Updated last year