Alternatives and similar repositories for squigualiser

Users that are interested in squigualiser are comparing it to the libraries listed below

• skovaka / uncalled4
  ☆74Updated 7 months ago
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆68Updated 2 weeks ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 3 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 4 months ago
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆80Updated 4 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆108Updated last month
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆102Updated 7 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆79Updated 2 weeks ago
• epi2me-labs / wf-basecalling
  ☆44Updated 3 weeks ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆123Updated last month
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆139Updated last month
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated 11 months ago
• epi2me-labs / modbam2bed
  ☆49Updated last year
• twolinin / longphase
  ☆116Updated last week
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆125Updated 2 weeks ago
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆32Updated this week
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆111Updated 2 weeks ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• SorenKarst / longread_umi
  ☆78Updated 4 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆115Updated 5 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆90Updated last month
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆183Updated 3 weeks ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆122Updated 2 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆125Updated 8 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆112Updated 5 months ago
• daewoooo / SVbyEye
  ☆137Updated 3 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆150Updated 2 weeks ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆195Updated 2 weeks ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆144Updated last year