Alternatives and similar repositories for squigualiser

Users that are interested in squigualiser are comparing it to the libraries listed below

• skovaka / uncalled4
  ☆78Updated 9 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 5 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆105Updated 9 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆134Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆119Updated 3 weeks ago
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆70Updated last month
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆87Updated last week
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆113Updated 3 months ago
• epi2me-labs / wf-basecalling
  ☆46Updated last week
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆106Updated last year
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆96Updated 3 months ago
• daewoooo / SVbyEye
  ☆141Updated 5 months ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• twolinin / longphase
  ☆119Updated last week
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆32Updated last week
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆84Updated 6 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆127Updated 3 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆112Updated 7 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆162Updated this week
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆100Updated last month
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆93Updated 6 months ago
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆87Updated last month
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆123Updated last year
• epi2me-labs / modbam2bed
  ☆50Updated last month
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆117Updated 3 weeks ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆124Updated 3 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated last month
• marbl / HG002
  A complete diploid human genome
  ☆136Updated last month
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆196Updated 2 months ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆113Updated last week