hiruna72 / squigualiser
Visualise and analyse nanopore (ONT) raw signals
☆112Updated last month
Alternatives and similar repositories for squigualiser:
Users that are interested in squigualiser are comparing it to the libraries listed below
- Pipeline to convert a haploid assembly into diploid☆100Updated last month
- Research release basecalling models and configurations☆107Updated 9 months ago
- ☆37Updated last week
- Collection of tools for the analysis of CpG data☆80Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆112Updated 3 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated last month
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆28Updated 2 weeks ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆73Updated last month
- A list of software for pangenomics☆105Updated 2 weeks ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- Read Until client library for Nanopore Sequencing☆104Updated 5 months ago
- ☆76Updated 4 years ago
- Dfam Transposable Element Tools Docker container.☆88Updated last week
- Long-read mock community experiments☆104Updated 3 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆138Updated 2 months ago
- Pangenome-based genome inference☆125Updated last week
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆58Updated 5 years ago
- ☆48Updated 6 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆91Updated 3 weeks ago
- Somatic structural variant caller for long-read data☆60Updated last week
- Simple pileup-based variant caller☆88Updated 3 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- ☆76Updated 3 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆98Updated this week
- Fast and accurate coordinate conversion between assemblies☆112Updated 5 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- Make colorful identity heatmaps of genomic sequence☆111Updated 9 months ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆45Updated 2 weeks ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆96Updated last week