Alternatives and similar repositories for seq2squiggle:

Users that are interested in seq2squiggle are comparing it to the libraries listed below

• novoalab / SeqTagger
  Super-fast and accurate demultiplexing of direct RNA-seq runs.
  ☆13Updated 2 months ago
• hasindu2008 / sigtk
  A simple toolkit for manipulating nanopore signal data
  ☆18Updated 7 months ago
• Psy-Fer / blue-crab
  crab go snap snap
  ☆38Updated last week
• welch-lab / SquiggleNet
  ☆20Updated 2 years ago
• lrslab / Giraffe_View
  Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.
  ☆13Updated 7 months ago
• comprna / radian
  Nanopore direct RNA basecaller
  ☆11Updated 2 years ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆29Updated last year
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆33Updated last month
• joshidhaivat / QAlign
  ☆9Updated 3 years ago
• dietvin / pod5Viewer
  GUI for inspecting POD5 files
  ☆27Updated 4 months ago
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆55Updated 2 weeks ago
• dayzerodx / counterr
  ☆31Updated 11 months ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆55Updated 4 years ago
• rnajena / read5
  Wrapper to read fast5, slow5, blow5 and pod5 files.
  ☆10Updated last month
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆50Updated 11 months ago
• rsemeraro / PyPore
  A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data
  ☆20Updated 2 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆36Updated 2 months ago
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 3 years ago
• hsinnan75 / GSAlign
  GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
  ☆57Updated last year
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆21Updated last month
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆36Updated 2 weeks ago
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆66Updated 7 months ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆25Updated 11 months ago
• rpetit3 / vcf-annotator
  Add biological annotations to variants in a given VCF file.
  ☆30Updated 3 years ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆33Updated last year
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆14Updated 7 months ago
• broadinstitute / GATK-for-Microbes
  ☆26Updated 3 years ago
• adelq / dnds
  Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
  ☆25Updated 6 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated last month