End-to-end simulation of nanopore sequencing signals with feed-forward transformers
☆18Jun 4, 2026Updated 4 months ago
Alternatives and similar repositories for seq2squiggle
Users that are interested in seq2squiggle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- a tool for simulating nanopore raw signal data☆83Mar 4, 2026Updated 7 months ago
- Systematic evaluation of computational tools for multitype RNA modification detection using nanopore direct RNA sequencing☆15Jul 2, 2026Updated 3 months ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated last year
- Realtime base modification frequency tool☆15Sep 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- nf-core/taxprofiler post-processing; verification of classification results; consensus maps☆11Oct 22, 2026Updated last week
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆122Oct 20, 2020Updated 6 years ago
- breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitution…☆11Aug 1, 2026Updated 2 months ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- ☆10Jun 9, 2025Updated last year
- ☆16Jul 24, 2026Updated 3 months ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆12Sep 26, 2024Updated 2 years ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 7 months ago
- Taxon Set Enrichment Analysis☆12Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generate mutated sequence files from a reference genome.☆11Oct 14, 2026Updated 2 weeks ago
- ☆17Jul 28, 2025Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 4 months ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆13Aug 27, 2025Updated last year
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 7 months ago
- Calculate confidence scores from Kraken2 output☆25Feb 18, 2024Updated 2 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 10 years ago
- Compute hash digests for DNA sequences in a FASTA file☆12May 31, 2026Updated 4 months ago
- Listing of GPU based bioinformatics software & sites & publications☆12Jan 16, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Source code for the DeepViral paper☆12Mar 17, 2021Updated 5 years ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Oct 8, 2026Updated 3 weeks ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated last year
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated 2 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Oct 11, 2026Updated 2 weeks ago
- GPU CRF-CTC decoding for nanopore basecalling☆16Oct 17, 2026Updated last week
- ☆23Jan 18, 2026Updated 9 months ago
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Aug 27, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 7 months ago
- A context-based long-read simulator☆15Oct 12, 2026Updated 2 weeks ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.☆19Nov 30, 2017Updated 8 years ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated 2 years ago
- Matlab GUI based package for nanopore signal analysis☆25Dec 18, 2025Updated 10 months ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆45Feb 13, 2026Updated 8 months ago