Alternatives and similar repositories for seq2squiggle

Users that are interested in seq2squiggle are comparing it to the libraries listed below

• joshidhaivat / QAlign
  ☆9Updated 3 years ago
• comprna / radian
  Nanopore direct RNA basecaller
  ☆11Updated 2 years ago
• lrslab / Giraffe_View
  Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.
  ☆13Updated 8 months ago
• rikuu / Gap2Seq
  Gap2Seq is a gap filling and insertion genotyping tool.
  ☆22Updated 9 months ago
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆40Updated last month
• dayzerodx / counterr
  ☆31Updated last year
• hasindu2008 / sigtk
  A simple toolkit for manipulating nanopore signal data
  ☆18Updated 7 months ago
• hitbc / gcSV
  ☆20Updated 2 months ago
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 4 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• welch-lab / SquiggleNet
  ☆20Updated 2 years ago
• CuiMiao-HIT / miniSNV
  ☆18Updated 5 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆35Updated 5 months ago
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 2 years ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 5 months ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆29Updated 6 months ago
• LHG-GG / I002C
  Telomere-to-Telomere diploid Indian Genome
  ☆13Updated last month
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated this week
• dietvin / pod5Viewer
  GUI for inspecting POD5 files
  ☆28Updated 4 months ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆33Updated last year
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 6 months ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆39Updated this week
• UCSC-nanopore-cgl / margin
  ☆30Updated 2 years ago
• pkubioinformatics / nanoreviser
  NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm
  ☆28Updated last year
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆21Updated 2 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 2 months ago
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆34Updated 11 months ago